Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o23
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734...    29   3.0  
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159...    27   9.2  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    27   9.2  
02_01_0656 - 4870315-4870975,4872018-4872245,4872874-4872987,487...    27   9.2  

>02_05_1137 -
           34372803-34372869,34373088-34373229,34373334-34373403,
           34373521-34373823,34374215-34374280,34374425-34374490,
           34374584-34374682,34376153-34376310,34376951-34377039,
           34377209-34377591
          Length = 480

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 128 VAGERAHGPLCEKWLSETIGKTQREYCNPP*GMRSMSRLDSEDIFEKKSKLSLSLNDTLL 307
           VAG R  G  C  W    IG+  +E        R+ + +D +   E    +    ++   
Sbjct: 34  VAGGRRQGRWCRSWHGRRIGRDDQEV-----RARTANTIDIDHDLEILVVIFACYDNIGT 88

Query: 308 KRKATTYFMQYMETIGQHLLVKCWLDLEDFKSHFRNTD 421
           +R A  YF Q  E +G H      L+L+D    F++ D
Sbjct: 89  ERSA--YFRQIEEDVGTH--PAAILELKDAVGAFQSMD 122


>09_04_0703 -
           19614057-19614264,19615305-19615407,19615880-19615973,
           19616216-19616229,19616384-19616595,19617653-19617940,
           19618275-19618362,19618444-19618515,19618597-19618672,
           19618755-19618813,19618953-19619016,19619253-19619402
          Length = 475

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 158 CEKW-LSETIGKTQREYCNPP*GMRSMSRLDSEDIFEK 268
           C  W L + +   + EY NPP  +      DS DIF K
Sbjct: 346 CHSWSLGKVLNHLKLEYGNPPVMIHENGYSDSPDIFGK 383


>03_01_0438 +
           3399203-3399297,3399389-3399480,3399638-3399750,
           3400345-3400610,3400793-3400864,3401023-3401098,
           3401241-3401339,3401432-3401586,3401679-3401783,
           3401880-3401966,3402459-3402543,3402626-3402734,
           3403468-3403544,3403635-3403715,3404137-3404328,
           3404415-3404528,3404650-3404742,3404864-3404990,
           3405075-3405151,3405455-3405502,3405588-3405657,
           3405737-3405810,3405895-3406005,3406222-3406300,
           3406936-3408320
          Length = 1293

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +2

Query: 188 KTQREYCNPP*GMRSMSRLDSEDIFEKKSKLSLSLNDTLL----KRKATTYFMQYMETIG 355
           + Q  + N P G ++ S        ++ S ++L +N+T L    KR + T       T+G
Sbjct: 516 RAQSTFSNSPNGAQNSSHYSESTEGQRSSSMALEVNETRLNSIRKRPSKTLSKSNDYTLG 575

Query: 356 --QHLLVKCW 379
             +H+L+  W
Sbjct: 576 PREHVLIVGW 585


>02_01_0656 -
           4870315-4870975,4872018-4872245,4872874-4872987,
           4873813-4873901
          Length = 363

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 79  KSSPEDIKVKLLYCRWMSTTVQNFK 5
           K+ PED+ VK+LYC    T +   K
Sbjct: 31  KTGPEDVVVKVLYCGICHTDIHQAK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,556
Number of Sequences: 37544
Number of extensions: 288380
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)