Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o23
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g ...    44   7e-05
Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    29   3.6  
Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...    28   6.2  

>U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g
           protein signalingprotein 5 protein.
          Length = 492

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 19/51 (37%), Positives = 34/51 (66%)
 Frame = +2

Query: 257 IFEKKSKLSLSLNDTLLKRKATTYFMQYMETIGQHLLVKCWLDLEDFKSHF 409
           I ++K +L+ SL+  L+   A +YF+QY+++  +  L+K W+ +E FKS F
Sbjct: 71  IVKQKPQLAFSLDRLLIDSSALSYFIQYLDSTDKLNLIKFWMHVEGFKSSF 121


>Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical
           protein M01F1.3 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 263 EKKSKLSLSLNDTLLKRKATTYFMQYMETIGQHLLVKCWLDLEDF 397
           E + ++   L D          F QYM+   +HLLVK W+  E F
Sbjct: 269 EAEDEIKQCLADLRASNVDVVTFGQYMQPTKRHLLVKEWVTPEKF 313


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 306 LKEKQLRILCNTWKPSDNIYLLNVG*IWKISNHTLEIQTMLEKIILYSVKLRAVIYIV 479
           L  K+LR L N     D+I+    G +   ++  L++  + +KI+  SVK+  V Y++
Sbjct: 442 LTNKELRKLENINTAVDDIFYAGTGMLLLRNDDGLQLFDVQQKIVTASVKVSKVRYVI 499


>Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical
           protein M163.2 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 344 ETIGQHLLVKCWLDLEDFKSHFRNTDNVRKNNFVFCKTQSCD 469
           E + Q L   C L L+D  + F + DN  + N V CK + C+
Sbjct: 228 EDVRQCLWDGCTLTLDDRATFFVHVDNHIQKNEVNCKWRYCE 269


>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 65  FWTRLHSKFLTSIYRIKKLKIVAGERAHGPLCEKWLSETIGKTQREY 205
           FW    SKF    + + K+ I   E +H PL     S  IG+  R Y
Sbjct: 362 FWRENASKFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHY 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,249
Number of Sequences: 27780
Number of extensions: 299424
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)