Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o18
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    28   1.1  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    28   1.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.5  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.8  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 86  NTLTKFIHYSIXKSXPSLLQXF*IFSSRXKTTIPT--IPTMSDVLDLCRKFELFLPNVEL 259
           NT T F+ Y+      ++ Q   +F+ R K  + +  IPT  D+L     F+ ++ NVE 
Sbjct: 23  NTWT-FVPYANSNRGLNINQQLKLFNRRSKIALSSFIIPTSVDILVKVAGFQRYIVNVEF 81

Query: 260 S 262
           S
Sbjct: 82  S 82


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +2

Query: 194 PTMSDVLDLCRKFELFLPNVELS-LSEVIELDGCTKSLLNHFIKNPNTLNQRTLIKIQAI 370
           P +S +L+L    EL    +E +  SE +E       L + F    N++ Q  + +++ +
Sbjct: 137 PQLSSILELP---ELMNACIERNYFSETLEFQALAYRLKDRF--GTNSIIQELITQVETL 191

Query: 371 IDYMHEKINIGNWKDVKLYLRKTITISSYLKL 466
           +  + EK+ +   K +KLY    I + +YL++
Sbjct: 192 VVKLTEKLILQLQKPLKLY--SLIKVVTYLRV 221


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 203 SDVLDLCRKFELFLPNV--ELSLSEVIELDGCTKSLLNHFI-KNP 328
           S+V D   ++++ + N   E +L E++E+ GC   ++ +FI K P
Sbjct: 263 SEVEDEMSEYDVRVLNFLNESTLQEIVEVSGCESKVVEYFISKRP 307


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 304 FESLYKKSKHLESANFNQNTSNNRLY 381
           FESL+K  KH E++     + NN  Y
Sbjct: 179 FESLHKNHKHYENSYRPSRSQNNSHY 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,387
Number of Sequences: 5004
Number of extensions: 38417
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)