Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o18
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326...    28   5.9  
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    27   7.7  
06_01_0454 - 3234331-3236299,3237254-3238074                           27   7.7  

>05_01_0414 +
           3262886-3262957,3264517-3264597,3265115-3265214,
           3265473-3265522,3265581-3265671,3266636-3266715,
           3266940-3267005,3267761-3267860,3267934-3268011,
           3268165-3268232,3268305-3268373,3268485-3268562,
           3269561-3269631,3270632-3270709,3270808-3270913,
           3271475-3271579,3272256-3272387,3272464-3272571,
           3272655-3272764,3272868-3272963,3273155-3273617
          Length = 733

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 233 ELFLPNVELSLSEVIELDGCTKSLLNH--FIKNPNTLNQRTLIKIQAIIDYMHEKINIGN 406
           ++F  +  L +   +E D   +++ NH  F+K      +   IK  +++  +H+   IG 
Sbjct: 224 KIFSDDFILEIIGALEYDPEARTVQNHRTFLKEHVVFKEAIPIKNASVVSKIHQTYRIGY 283

Query: 407 WKDVKL 424
            KDV L
Sbjct: 284 IKDVIL 289


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 317 IKNPNTLNQRTLIKIQAIIDYMHEKINIGN-WKDVKLYLRKTITISSYLKL 466
           +KNPNTL+ +  ++  + I+++     I   WK  + +  KTI + + + L
Sbjct: 659 MKNPNTLSAQETLEWSSYINWLLYSDGIDTIWKGQEQFFEKTIELLTGINL 709


>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 FLPNVELSLSEVIELDGCTKSLLNHFIKNPNTLNQRTLIKIQAIIDYMHEKI 394
           F P  E  ++ V++LDGC +SL N+ + N   L     ++I+  +  +   I
Sbjct: 569 FHPLSEFKVARVLDLDGC-QSLTNNHLANIEKLVHLQYLRIRGRVTVLPANI 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,182
Number of Sequences: 37544
Number of extensions: 181882
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)