Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o18
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 310 SLYKKSKHLESANFNQNTSNNRLYA*KNKYWKLERCKII 426
           SL    K+    N+N N +NN      N Y KL +  II
Sbjct: 84  SLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 310 SLYKKSKHLESANFNQNTSNNRLYA*KNKYWKLERCKII 426
           SL    K+    N+N N +NN      N Y KL +  II
Sbjct: 84  SLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 FESLYKKSKHLESANFNQNTSNNRLYA 384
           F SL KKS + + AN N    N+ ++A
Sbjct: 466 FASL-KKSPYFKEANLNTRMLNDNVFA 491


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 FESLYKKSKHLESANFNQNTSNNRLYA 384
           F SL KKS + + AN N    N+ ++A
Sbjct: 466 FASL-KKSPYFKEANLNTRMLNDNVFA 491


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 560 LDIQIQGQNQLFCKTLSVSHPLDYLDLSNRLK 465
           +DI +          +++ +P+++ DLSN  K
Sbjct: 572 MDIDVCDNQTYTSLQMAMKNPIEFTDLSNERK 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,307
Number of Sequences: 438
Number of extensions: 3088
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)