Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o07
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.7  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    25   4.8  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    25   6.4  

>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 345 SGLPRIIPKLAKISQIDPAVLEF*MNINSFLYIYRCFVMSLSTFKALM 202
           SG+ +I   L  ++++DPA  +    + S L  +RC +     +K ++
Sbjct: 15  SGIDKIAAILVNVARLDPASSKSTAQLVSMLNEFRCILRLPGLYKLIV 62


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 252 YIYRCFVMSLSTFKALMFVCVTVMQFVMYLFSS 154
           Y+Y  +   L     L+F+ +++  FVM + SS
Sbjct: 114 YLYSRYRPGLGAVLVLLFLLISIAHFVMLVISS 146


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 254 YIFIDVSSCRCLHLKRLCSFAS 189
           Y F+  S+C+  H+K LC   S
Sbjct: 67  YAFLYCSNCKFPHIKGLCQICS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,369
Number of Sequences: 5004
Number of extensions: 20867
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)