Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o07
         (423 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065760-1|BAC05980.1|  318|Homo sapiens seven transmembrane hel...    31   2.1  
BC040535-1|AAH40535.1|  477|Homo sapiens transmembrane and coile...    29   6.5  
AB032971-1|BAA86459.1|  467|Homo sapiens KIAA1145 protein protein.     29   6.5  

>AB065760-1|BAC05980.1|  318|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 318

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 327 IPKLAKISQIDPAVLEF*MNINSFLYIYRCFVMSLSTFKALM 202
           +P+L K++  D  VLE  M  N+ L    CF++ L ++ AL+
Sbjct: 181 VPQLIKLACTDTFVLELLMVSNNGLVTLMCFLVLLGSYTALL 222


>BC040535-1|AAH40535.1|  477|Homo sapiens transmembrane and
           coiled-coil domain family 3 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -1

Query: 267 INSFLYIYRCFVMSLSTFKALMFVCV-TVMQFVMYLFSSSCH--GNYYA 130
           +N+ + + RC  + L+ F  ++ VCV T+ +FV  +  S CH  G ++A
Sbjct: 405 VNAKVLLGRCINVILA-FMTVILVCVSTIAKFVSPMMKSRCHILGTFFA 452


>AB032971-1|BAA86459.1|  467|Homo sapiens KIAA1145 protein protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -1

Query: 267 INSFLYIYRCFVMSLSTFKALMFVCV-TVMQFVMYLFSSSCH--GNYYA 130
           +N+ + + RC  + L+ F  ++ VCV T+ +FV  +  S CH  G ++A
Sbjct: 395 VNAKVLLGRCINVILA-FMTVILVCVSTIAKFVSPMMKSRCHILGTFFA 442


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,000,443
Number of Sequences: 237096
Number of extensions: 562930
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)