Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o07
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   5.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   10.0 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   10.0 

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 149 QDDENRYITNCITVTQTNI 205
           +++ N+ IT C  ++ TN+
Sbjct: 94  ENEINQLITECSAISDTNV 112


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 201 FVCVTVMQFVMYLFSS 154
           FVC  +M +++YL  S
Sbjct: 416 FVCFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 201 FVCVTVMQFVMYLFSS 154
           FVC  +M +++YL  S
Sbjct: 416 FVCFNLMYWIIYLHIS 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,480
Number of Sequences: 438
Number of extensions: 1610
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)