Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o06
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    29   0.85 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   1.1  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   4.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.5  

>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 556 FQKSNMYLTT*LFSIILAGSSINQDIA 476
           FQK  +YL   LF II++G++ NQ  A
Sbjct: 193 FQKYGLYLIPILFLIIMSGNNANQQAA 219


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 350 IIHNYFKRPLTSPFTQNHSRRCIISNNLRQG*AMTSIVTSTTVFYMYFRDETFFFIPS 177
           ++H + +  L  PF   H R  I+ NN R+   +T +++   ++ ++F    F+ + S
Sbjct: 322 VVHFFIRDSLEVPFIWQHRRDYIVHNN-RERNTITPLLSQNDLWNIFFLCTKFWSLHS 378


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +3

Query: 330 FEVVVNDKLIYS--KLKTMALP-DYGE-VAQVVHDVSKGQEPREIKGEQPIN 473
           FEVV N+ +I +  K +T+  P  Y + V ++ HD  + ++   +KG  PIN
Sbjct: 60  FEVVNNENIITTTPKHQTVITPKSYRKSVKRIKHDAPQNEDIPVMKGLAPIN 111


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 308 TQNHSRRCIISNNLRQ 261
           TQ H  RCII NNL+Q
Sbjct: 656 TQPHFVRCIIPNNLKQ 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,878
Number of Sequences: 5004
Number of extensions: 54118
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)