Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o06
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    29   4.7  
02_05_1247 + 35233756-35233785,35234902-35236107                       28   6.2  
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    28   6.2  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    28   8.3  

>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -3

Query: 461 FSFDFPWF----LAF*NIVNYLSYFSIIWQCH-CFELRVNQLIIHNYF 333
           F+   PWF    L     +N L+ F+  W  H CF +    LI+H Y+
Sbjct: 543 FTLATPWFRRGRLRLPRPLNRLTGFNAFWYSHHCFVIVYALLIVHGYY 590


>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 440 FLAF*NIVNYLSYFSIIWQCHCFELRVNQLIIHNYFKRPLTSPFTQNHSRRCIISNNLRQ 261
           FL+F N  +  + FS +  C C  +  + L+ H      L SPF   +   C IS+ ++ 
Sbjct: 13  FLSFLNFFHNSTAFSNLIGC-CLFILPSYLVGHYIEHHHLVSPFIPENQYICCISSIIKP 71

Query: 260 G 258
           G
Sbjct: 72  G 72


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 324 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVV 416
           G+FEV  N +L++SKL     P   E+ +++
Sbjct: 184 GAFEVYCNGQLVFSKLSEQRFPSEFELRELI 214


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 464 LFSFDFPWFLAF*NIVNYLSYFSI 393
           L   D PWF+ F  +VN+  +F I
Sbjct: 115 LLHLDSPWFMLFSQLVNWFMFFCI 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,597
Number of Sequences: 37544
Number of extensions: 290534
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)