Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o06
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    28   7.4  
AF408758-1|AAO27837.1|  309|Caenorhabditis elegans nuclear recep...    28   7.4  
AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transpor...    27   9.8  
AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
 Frame = +3

Query: 270 IIRNDTPSAMVLCKRGRQGS-----FEVVVNDKLIYSKLKT-MALPDYGEVAQVVHDVSK 431
           +I  + PS   L  +G Q +     F+ V ND ++  KL+T + LP++ +  +V    + 
Sbjct: 314 VIGYNLPSEEYLYSKGNQYALKTKLFDHVFND-IVVEKLRTKVLLPEHVKRVKVATPYAV 372

Query: 432 GQEPREIKGEQPINCAIS*LMLEPASIIENS---YVVKYMFDF 551
            + P E+K           L+LE  +I+ +    + V Y F+F
Sbjct: 373 DRRPEELKPTYLDTTGRLVLVLEKENIVPDHSQFFTVTYEFEF 415


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 201 IPKVHVEYCGACDYGGHCLALAQIIRNDTPSAMVLCKRGRQGSFEVVVNDKLIY-SKLKT 377
           +P     Y G   +  +  +  + I N T  + V  KR +Q  FEV+     I  + LK+
Sbjct: 353 VPDRCTRYIGNILFENYMTSDYEDITNYTKISQVDMKRVQQ--FEVIFGTIYIQGTTLKS 410

Query: 378 MALPDYGEVAQVVHDVSKG 434
             LP+  E+ QV   V+KG
Sbjct: 411 FTLPNLQEIYQVEDIVNKG 429


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 201 IPKVHVEYCGACDYGGHCLALAQIIRNDTPSAMVLCKRGRQGSFEVVVNDKLIY-SKLKT 377
           +P     Y G   +  +  +  + I N T  + V  KR +Q  FEV+     I  + LK+
Sbjct: 353 VPDRCTRYIGNILFENYMTSDYEDITNYTKISQVDMKRVQQ--FEVIFGTIYIQGTTLKS 410

Query: 378 MALPDYGEVAQVVHDVSKG 434
             LP+  E+ QV   V+KG
Sbjct: 411 FTLPNLQEIYQVEDIVNKG 429


>AF408758-1|AAO27837.1|  309|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 372 KTMALPDYGEVAQVVHDV--SKGQEPREIKGEQPINCAIS*LMLEPASIIENSYVVKYMF 545
           + +  P    + Q +H V   +G E   I+  Q +  ++S  + E    + NSY+V   F
Sbjct: 234 RAICAPQRDTIVQALHKVVEERGDEDPAIRVGQLL-LSMS-YITEQVQAMTNSYLVMTFF 291

Query: 546 DFWKCDTIDCTVCSY 590
           D   CD+I   + S+
Sbjct: 292 DVVSCDSIMYDLLSF 306


>AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transporter
           (pgp related)protein 6 protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 649 QTYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKS---NMYLTT*LFSIILAGSSINQDI 479
           Q +KS   S  LC +  L  + QT+  I S +  S    MY    +  IILAGS+I   +
Sbjct: 213 QEFKS---SFKLCVSQGLRTFAQTIGCIGSLYFLSPTMTMYTVAVVPGIILAGSAIGAGL 269

Query: 478 AQL 470
            QL
Sbjct: 270 RQL 272


>AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical
           protein F45D11.10 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 425 NIVNYLSYFSI-IWQCHCFELRVNQLIIHNYFKRPLTS 315
           N + + +YFS  +W     +LR+ +L +HN  K+ L++
Sbjct: 179 NRMEFKNYFSRQVWDLRNVKLRIKKLEVHNEIKQVLST 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,670
Number of Sequences: 27780
Number of extensions: 292057
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)