Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o05
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0619 - 4961588-4962409                                           30   2.0  
09_06_0082 + 20749425-20749589,20750137-20750238,20750320-207503...    29   2.7  
11_06_0710 - 26492093-26493460                                         28   6.2  
03_06_0610 + 35052455-35053429,35054936-35055511                       28   8.2  

>11_01_0619 - 4961588-4962409
          Length = 273

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/104 (23%), Positives = 37/104 (35%)
 Frame = +3

Query: 54  VKKENHNMSKKKGNKKNQDLDDDFDEKPSVVNEKTELTSXXXXXXXXXXXTGDCSDSDEE 233
           +KKE    SK+K  +K +   D    + SV +  +E  S           +   S SD E
Sbjct: 161 LKKEKSEKSKRKSKRKYRSRSDSDSSEASVFDSDSE--SSVTGSEYSSGSSSSYSSSDSE 218

Query: 234 NIKKVPVSDEEDVXXXXXXXXXXXXXXXXXXADRSDDEEDDNKS 365
           + K+ P   ++                    A  SD + DD  S
Sbjct: 219 DKKRRPKRKQQKRRHRRETSSSASSESDSESASASDSDSDDKGS 262


>09_06_0082 +
           20749425-20749589,20750137-20750238,20750320-20750384,
           20750471-20750588,20750937-20751012,20751304-20751365,
           20751457-20751588,20751686-20751739,20751969-20752034,
           20752115-20752189,20752271-20752321
          Length = 321

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 301 RKERVKKRVLIGQMMKRMITNPLSTIQQMFHQSQLNLQKRKKGKVR 438
           R++ V+KRV I   ++      L  +QQ   + +L +QKRKK +VR
Sbjct: 83  REQYVEKRVNIRTKIEEEEKEKLQKLQQ--EEEELQMQKRKKRRVR 126


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/94 (26%), Positives = 31/94 (32%)
 Frame = +3

Query: 81  KKKGNKKNQDLDDDFDEKPSVVNEKTELTSXXXXXXXXXXXTGDCSDSDEENIKKVPVSD 260
           KKK   K+ D DDD  EK S    K                     D D++   K   SD
Sbjct: 141 KKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKKSSD 200

Query: 261 EEDVXXXXXXXXXXXXXXXXXXADRSDDEEDDNK 362
           E++                     +S DEEDD K
Sbjct: 201 EDN--------DGAKKKKKKKSKGKSSDEEDDEK 226


>03_06_0610 + 35052455-35053429,35054936-35055511
          Length = 516

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 87  KGNKKNQDLDDDFDEKPSVVNEKTEL 164
           +G K +  +DDD D++PSV +E  EL
Sbjct: 15  EGGKGDGAVDDDGDDQPSVASELREL 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,651
Number of Sequences: 37544
Number of extensions: 181016
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)