Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o04
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           30   2.1  
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    29   3.7  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 93  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 257
           VTR  R   A     A A   PP +P+S KT+ + K  +P+    C      +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261


>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 545 NIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEKKKMLHKNTLNYF*LRNIL 396
           N    K+ + F    K  CK   C + F YEK K+ H N    + L++I+
Sbjct: 408 NCSGIKSMLNFSEMAKTDCK--MCDMSFDYEKIKLSHLNQQQLYSLKSII 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,449
Number of Sequences: 37544
Number of extensions: 362174
Number of successful extensions: 855
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)