Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9o01
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 34 0.024
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 31 0.23
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.2
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 2.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 4.9
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 4.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 6.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 6.5
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 8.6
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 25 8.6
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 33.9 bits (74), Expect = 0.024
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 ILIDLKLVKNSITHAKLLVKNCKRKGL-SKMESNDFR 109
+LID + NS+TH LL+K C K L S ++ NDF+
Sbjct: 654 VLIDYLVKSNSVTHRALLLKLCVNKLLGSLLDHNDFK 690
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 30.7 bits (66), Expect = 0.23
Identities = 33/116 (28%), Positives = 51/116 (43%)
Frame = +2
Query: 2 ILIDLKLVKNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKEEEKGDRFARINMEVK 181
+LID K+V+ + A LLV K++ + K YF I ++ R + + +V
Sbjct: 287 LLIDSKVVQTVLERATLLVYTRKQQHIVKNTKVHDNDYFSSIPNVDD--IRSIKNSWKVF 344
Query: 182 HQAIDEQINPFTKKTVYTQTYPTKLIPAAPRKACCFYCS*STVHKIYSISSYAKQE 349
H DE++N KK V +L P+K F S K YS S +K +
Sbjct: 345 H---DEKLNEL-KKQVEISASAAQLNGLYPQKKRAFVSHFSQNRKPYSQSDISKAQ 396
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -1
Query: 319 YFMNSALRAIKAASLSWCRWNQFRWVSLRVYSFFCKRIDLFVDSLMFHFHIDSCKPVSFL 140
+F A I A C W ++ V CK IDL DS + H + + +S+
Sbjct: 182 FFEEIADACISALPQDACLWAMEVCNTILVSDLPCKLIDLHNDSFLHHSNYYAGFGLSYY 241
Query: 139 LFLS 128
L+LS
Sbjct: 242 LYLS 245
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/63 (20%), Positives = 32/63 (50%)
Frame = +2
Query: 20 LVKNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKEEEKGDRFARINMEVKHQAIDE 199
++ ++ L V+ C M+ +D YF+ +++ + +F+ ++ E+ Q +E
Sbjct: 101 ILPKTLIRFSLTVEECTNPEYC-MDEHDTE-YFLKLKQAQPSLSKFSELDFEIVMQTFEE 158
Query: 200 QIN 208
+IN
Sbjct: 159 EIN 161
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 214 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHCS 312
++++C H P + +GTK +HCS
Sbjct: 198 HEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCS 230
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 214 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHCS 312
++++C H P + +GTK +HCS
Sbjct: 393 HEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCS 425
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 214 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHCS 312
++++C H P + +GTK +HCS
Sbjct: 310 HEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCS 342
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 148 RQVCKNQYGSETSSYRRTNQSVYKKNCIHADLPNEIDSSGTK 273
+++ K Y S++SS ++ + K +AD+P E+D++ TK
Sbjct: 270 QELTKATYVSQSSSISSEDEEIAK----NADVPAEVDNNSTK 307
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +2
Query: 26 KNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKEEEKGDRFARINMEVK 181
K + T K++ ++ KR+ ++ D +P + +++ EKGD+ ++ VK
Sbjct: 624 KRTKTVEKIMDESRKRRSNQLEQTQDGKPELKIKKRKAEKGDQRQELDRIVK 675
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 374 CFFLRDIRIPVLHNY*LNIFYEQCFKSNKSSKPFLVP 264
C LRDIR + + I C K S P+L+P
Sbjct: 371 CDALRDIRFRLAYPECFQIISSLCDKLGPHSDPYLIP 407
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 656 IFWYNLYSLHTLNFLIFMMTIVQINPMLSNLTI 558
+FWY +Y+ N+L ++ N + S+L +
Sbjct: 1084 LFWYQIYNNFDANYLFDYTYVMLFNLIFSSLPV 1116
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 107 RPYFILIRKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKLI 259
R YF++ + E + N++ K+ DE NP+ + +Y + P KL+
Sbjct: 140 RIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPY--QVLYDRLGPLKLM 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,080
Number of Sequences: 5004
Number of extensions: 65107
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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