Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o01
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    31   0.73 
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    29   2.9  
06_03_1480 - 30432718-30432996,30433151-30434123,30434251-304345...    29   2.9  
06_01_1182 + 10150911-10150979,10150984-10151457                       28   6.8  

>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 27/108 (25%), Positives = 47/108 (43%)
 Frame = +2

Query: 419 CSWNVNKNINLPQDVYKSVLNLFTIIQIFSTVSFFGFKFGQ*YIRNKWLNWIA*GLFGRL 598
           C WN++  I  P+D    +  LFT          +  + G  +I+   ++ +  G  GR+
Sbjct: 230 CGWNLDTTIIFPED--HIMPRLFTPSLAKKYEELYQ-QNGVKFIKGALIDKLEAGSDGRV 286

Query: 599 SS*ISEN*ECVKNINCTKIYLFVFLFIIA*DLLFSRLRIYRSRHDIFI 742
           SS + E+   V+    T  + F F F  A ++LF  L     R  + +
Sbjct: 287 SSAVLEDGSVVEADTVTTFFFFFFFFFCA-NILFHHLNYLLLRMKVIV 333


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 696 NKSYAMMNKNTNKYILVQFIFFTH--S*FSDIHDDNRPNKP-YAIQFNHLFRIYYCPNLN 526
           N SY  + +      L ++ F  H  S  SD +++ +   P Y    NHL   +Y P ++
Sbjct: 447 NSSYCSVLRQLESARLKEYYFKAHDPSSLSDGNENLKYRNPKYLSMLNHLR--FYMPEIH 504

Query: 525 PKKDTVL 505
           PK D +L
Sbjct: 505 PKLDKIL 511


>06_03_1480 -
           30432718-30432996,30433151-30434123,30434251-30434585,
           30434929-30435075,30435498-30435569
          Length = 601

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 696 NKSYAMMNKNTNKYILVQFIFFTH--S*FSDIHDDNRPNKP-YAIQFNHLFRIYYCPNLN 526
           N SY  + +      L ++ F  H  S  SD +++ +   P Y    NHL   +Y P ++
Sbjct: 358 NSSYCSVLRQLESARLKEYYFKAHDPSSLSDGNENLKYRNPKYLSMLNHLR--FYMPEIH 415

Query: 525 PKKDTVL 505
           PK D +L
Sbjct: 416 PKLDKIL 422


>06_01_1182 + 10150911-10150979,10150984-10151457
          Length = 180

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 262 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFHIDSCKPVSFLLFLSD 125
           W+  RWV       F    DL + +L    H DS +  SF   L D
Sbjct: 71  WSSIRWVFRDATLLFIPCNDLAIAALFLFSHADSVESASFHFRLHD 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,336
Number of Sequences: 37544
Number of extensions: 330862
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)