Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n15
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     29   1.8  
06_02_0011 - 10569471-10572245                                         29   1.8  
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234...    27   4.1  
05_03_0467 - 14366969-14367742,14368335-14368754,14370339-143704...    27   7.2  
02_01_0688 + 5131555-5132334                                           27   7.2  
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744...    26   9.5  

>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 305 YLY*QSSGHFLFAGLIFVTTGSSCDVLLYLEYNLHNSAMTP 183
           YL   + G   F G+ F+TTG   +  +  +YNL+  A +P
Sbjct: 229 YLMALAQGVLYFYGMTFITTGRKMERKVADKYNLNYGAKSP 269


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 130 LRCLIGYFAASCRRRKFCSFFHSYILYIFL 41
           L CL+G +AA C R    SF+  +I+ I L
Sbjct: 293 LLCLVGAYAAGCCRDVATSFYVMFIIMIVL 322


>12_02_0706 +
           22319293-22319803,22321625-22321766,22322223-22323451,
           22323471-22323916,22324001-22324510
          Length = 945

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 275 LFAGLIFVTTGSSCDVLLYLEYNLHNSAMTPAPRTRPPMIVSQGVLS 135
           L+A  + +TTG +   LL+ +Y   ++ + PA      M++ QGVLS
Sbjct: 316 LYACGLVITTGLAAWRLLHRDYGDGSNNLRPALDVLYTMVLLQGVLS 362


>05_03_0467 -
           14366969-14367742,14368335-14368754,14370339-14370496,
           14370571-14370664,14371536-14371649,14371794-14371985,
           14372095-14372176,14372280-14372471,14372773-14373371
          Length = 874

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 224 LYLEYNLHNSAMTPAPRTRP 165
           L+L   LHN +  P+PR RP
Sbjct: 11  LHLSLQLHNPSAIPSPRRRP 30


>02_01_0688 + 5131555-5132334
          Length = 259

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 194 AMTPAPRTRPPMIVSQGVLSPSPLF 120
           A  PAP   PP + +  V +P PLF
Sbjct: 26  APAPAPAPAPPPVPAAAVAAPLPLF 50


>07_01_0890 -
           7437901-7439339,7439452-7439657,7439841-7440171,
           7440268-7440405,7440619-7440874,7440963-7441318,
           7441421-7441709
          Length = 1004

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 164 PMIVSQGVLSPSPLFDWLF 108
           P IV+ GVL  +  F+WLF
Sbjct: 124 PYIVASGVLLTASFFEWLF 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,069,378
Number of Sequences: 37544
Number of extensions: 141679
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)