Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n15
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical pr...    30   0.70 
AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical ...    30   0.70 
AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical ...    30   0.70 
AF067618-7|ABS83851.1|  162|Caenorhabditis elegans Hypothetical ...    27   5.0  

>Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical
           protein T20F10.4 protein.
          Length = 416

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  GFIKIYTKCNYGKKNKISVFYTMPQNNQS 120
           GF++ Y K  YG+K+ +S+ Y  P+N  S
Sbjct: 168 GFVECYNKVIYGRKHNLSL-YRSPENKNS 195


>AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical
           protein Y26D4A.10 protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  GFIKIYTKCNYGKKNKISVFYTMPQNNQS 120
           GF++ Y K  YG+K+ +S+ Y  P+N  S
Sbjct: 168 GFVECYNKIIYGRKHNLSL-YRSPENKNS 195


>AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical
           protein Y40C7B.3 protein.
          Length = 416

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  GFIKIYTKCNYGKKNKISVFYTMPQNNQS 120
           GF++ Y K  YG+K+ +S+ Y  P+N  S
Sbjct: 168 GFVECYNKIIYGRKHNLSL-YRSPENKNS 195


>AF067618-7|ABS83851.1|  162|Caenorhabditis elegans Hypothetical
           protein F56H1.7 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 218 LEYNLHNSAMTPAPRTRPPMIVSQGVLSPSPLFD 117
           ++  +H+S++  A   R PMI   G   P P FD
Sbjct: 56  IKREMHSSSVLKAASFRKPMIKFVGARLPRPFFD 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,211,795
Number of Sequences: 27780
Number of extensions: 131384
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)