Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n15
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 278 FLFAGLIFVTTGSSCDVLLYLEYNLHNSAMTPAPRTRPPMIVSQG 144
           F+FA L         D+   LEY+L  S M+    TR  +++ +G
Sbjct: 272 FVFAALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTR-AIVIEKG 315


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 266 GLIFVTTGSSCDVLLYLE 213
           GL+  TT S C  L YL+
Sbjct: 173 GLVLYTTPSICTALGYLK 190


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 87  GNFVLFSIVTFCIYF 43
           G  VLF I  FCI F
Sbjct: 204 GASVLFEIFPFCIVF 218


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 266 GLIFVTTGSSCDVLLYLE 213
           GL+  TT S C  L YL+
Sbjct: 168 GLVLYTTPSICTALGYLK 185


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 208 LYSRYSNTSQEEPVVTKIN 264
           LY R+     EEP V +I+
Sbjct: 605 LYGRFKRGKYEEPTVGEIS 623


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,899
Number of Sequences: 438
Number of extensions: 2257
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)