Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n14
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    26   1.1  
03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182...    29   1.5  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    28   2.6  
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205...    27   4.5  
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958...    27   4.5  
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319...    27   6.0  
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    27   6.0  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 26.2 bits (55), Expect(2) = 1.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 118 KMNRFITRNCFVNSXQADDFTRQTVQDVRQAVLSSASLRPRIQEALE 258
           K+N     N   ++ QA + T   V  + +A L+SAS +  + E LE
Sbjct: 248 KLNFTSELNTICSALQAVNLTSTEVSSIPRAKLNSASYKDALPEILE 294



 Score = 21.4 bits (43), Expect(2) = 1.1
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 295 SNIIRDCYVNEAETLLMYRGCDE 363
           S I   CYVNE      +  C E
Sbjct: 334 STIDAACYVNEPRMQSFHEACSE 356


>03_05_0055 -
           20316184-20317349,20317786-20317926,20318097-20318222,
           20318382-20318429,20318536-20318640,20318746-20318890
          Length = 576

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 172 DFTRQTVQDVRQAVLSSASLRPRIQEALERIN 267
           DF RQT  D +   L     RP + EAL+ +N
Sbjct: 544 DFIRQTFMDKQNVKLDCKRFRPILLEALDNLN 575


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 169 DDFTRQTVQDVRQAVLSSA--SLRPRIQEALERI 264
           DD+ R+ + D  Q +LSSA  +LRPR  E L+R+
Sbjct: 627 DDYARRNMYD--QDMLSSADDALRPRYMECLDRM 658


>11_08_0004 +
           27518384-27519018,27519147-27519397,27520437-27520559,
           27523499-27524529
          Length = 679

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 169 DDFTRQTVQDVRQAVLSSASLRPRIQEALERI 264
           DD+ R+ + D      +  +LRPR  E L+R+
Sbjct: 613 DDYARRNMYDQNMLSSTDDALRPRYMECLDRM 644


>01_07_0019 +
           40494709-40494767,40495619-40495703,40495777-40495836,
           40495934-40496044,40496127-40496204,40496276-40496347,
           40496944-40497057,40498034-40498538,40499011-40499108,
           40499185-40499215,40499346-40499520,40499849-40500008,
           40501436-40501855,40502313-40503203
          Length = 952

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 164 RRMISQDKQCRM*DRQSSHRPRSDQEFKKL*KESILDFIEL 286
           +R ISQ       D Q   R R  ++  K  KE +LDF E+
Sbjct: 53  KRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEI 93


>11_06_0364 -
           22727978-22729149,22730475-22730727,22731628-22731963,
           22732306-22732512,22734988-22735686,22736441-22736590,
           22740204-22740962,22741023-22741235
          Length = 1262

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 187 TVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNII 306
           TV  V+ A+L    L+ R+Q  L  I   F    SF N++
Sbjct: 16  TVIKVQSAILEENQLKERVQHDLVFITDEFQMMQSFLNVV 55


>11_06_0361 -
           22711200-22712180,22712523-22712729,22715205-22715903,
           22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 187 TVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNII 306
           TV  V+ A+L    L+ R+Q  L  I   F    SF N++
Sbjct: 16  TVIKVQSAILEENQLKERVQHDLVFITDEFQMMQSFLNVV 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,243,138
Number of Sequences: 37544
Number of extensions: 131280
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)