Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9n13
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 0.57
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 28 1.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 1.7
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 27 1.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 3.0
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 4.0
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 7.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.0
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 25 9.3
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 25 9.3
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 9.3
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 29.1 bits (62), Expect = 0.57
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = +3
Query: 444 NRPPQSLVDLHSQVPSKENEASHSTPQMTSVNSNSAPHGLERNNRDMVVRIPFDIENG 617
N PP S VP + N ASH+ S N N A L R+ P +I NG
Sbjct: 189 NSPPNSRT-ARKPVPRRANSASHNLGSTKSPNGN-AKESLSRSAELPSKAKPMEINNG 244
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 348 FLKIKGLSKVTKEGLGIANNSELPVFMP 431
F+ + GLSK KEG N EL +++P
Sbjct: 47 FMDVFGLSKQIKEGADQLANHELAIYLP 74
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 408 SELPVFMPPVVINRPPQSLVDLHSQVPSKENEASHSTPQMTSVNS 542
S PVF P ++ S V S PS + ++++ TSVNS
Sbjct: 164 SSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNS 208
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 99 KLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGEPLIILKMRFNVLKCLV 278
K+ Q L+++ L C++ L L A+ Y++ + K PG LI + +V +CL+
Sbjct: 167 KVSNDQLLMELQL-CNARALDETGQFLEAAKCYYRVLQYKVPGNELIYRENLCSVAQCLL 225
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +3
Query: 396 IANNSELPVFMPPVVINRPPQSLVDLHSQVPSKENEASHSTPQMTSVNSNSAPHGLERNN 575
++N S LP PP V P ++ + +VP ++ + P+ V++ + L NN
Sbjct: 741 VSNISPLPTVAPPNVSGSPSETPISKPEKVP-VVSQTEKALPKPLGVDTEKY-YFLRYNN 798
Query: 576 RDMVVRIPFDIEN 614
+ V++ + N
Sbjct: 799 QTRKVKVESPLSN 811
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 4.0
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Frame = +3
Query: 63 EDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAA-SSTYFQEVLQKQPGEPLI 239
E Y +H +S F L Q L T + S H L + +A F +L+ P+
Sbjct: 885 ESYYDHSISPFDPLCQSSFLAPQTPVKSKHALPLVEANAPPWEPIDFSSLLESPVPNPVE 944
Query: 240 ILKMRFNVLKCLVE----FMYCGKTQCLEENLDELV 335
K+ L VE FMY + EE +E +
Sbjct: 945 PNKLSEKELDMTVEQWIKFMYAKCAKEFEEACEEKI 980
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 421 TGSSLLLAMPKPSLVTLDSPLIFKN 347
TG + +P+PSL T +SPL +N
Sbjct: 49 TGGRIATPLPQPSLKTPESPLSKRN 73
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 441 INRPPQSLVDLHSQVPSKENEASHSTPQMTSVNSNSAPHGLERNNRDMVVRIPFDIENGG 620
+ +P S+ VPS + S+ ++S +S S+P + ++V + + +G
Sbjct: 456 VKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGS 515
Query: 621 SSM 629
S++
Sbjct: 516 SAI 518
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 429 PPVVINRPPQSLVDLHSQVPSKENEASHSTPQMTSVNSNSAP 554
PPV L D+ + PS++ A H P + + +S+P
Sbjct: 229 PPVSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSSSP 270
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 198 FQEVLQKQPGEPLIILKM 251
FQ+VL + PG P+ ++K+
Sbjct: 285 FQQVLDELPGSPVFVMKL 302
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 224 RRTSYNIENEI*RFKMPSRVYVLREDSVLRRELR 325
R T Y +MPS V +R VLRR LR
Sbjct: 74 RHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLR 107
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 224 RRTSYNIENEI*RFKMPSRVYVLREDSVLRRELR 325
R T Y +MPS V +R VLRR LR
Sbjct: 74 RHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLR 107
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 441 INRPPQSLVDLHSQVPSKENEASHSTPQMTSVNSNSAPHGLERNNRDMVVRIP 599
+++P +S + Q PSKE E +TP + V S + + ++ V P
Sbjct: 435 VSKPKESAEE---QKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQP 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,478
Number of Sequences: 5004
Number of extensions: 49548
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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