Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9n13
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0802 - 7754561-7755628 40 0.001
08_01_0801 - 7750548-7751708 40 0.002
06_03_1063 - 27297755-27298748,27298791-27298834 39 0.004
10_08_0087 + 14730936-14732027 38 0.005
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 38 0.007
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 38 0.007
06_03_1064 - 27300735-27301829 37 0.016
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 36 0.027
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 36 0.027
10_08_0088 + 14734585-14734762,14735876-14736729 36 0.036
08_01_0808 + 7828453-7829607 35 0.048
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 35 0.048
08_01_0799 + 7734031-7735102,7735453-7735475 35 0.063
11_06_0430 - 23413909-23413978,23414078-23414159,23414538-234146... 34 0.083
08_02_1310 - 26037025-26038074 34 0.083
07_01_0484 - 3643294-3643478,3644282-3644555,3644646-3645018,364... 34 0.11
10_08_0079 + 14704086-14705195 33 0.15
08_01_0794 - 7687480-7687798,7687817-7688523 33 0.15
06_01_1008 - 7853089-7854147 33 0.15
11_06_0431 - 23424969-23426081 32 0.34
10_08_0085 + 14725531-14726622 32 0.34
08_01_0657 + 5674907-5674993,5675615-5676583 31 0.59
07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644 31 0.59
08_01_0197 + 1623454-1624566 31 0.78
03_06_0069 - 31449319-31450368 31 1.0
11_06_0415 + 23306555-23306794,23306842-23307684 30 1.4
10_08_0055 - 14505747-14506934 30 1.4
10_08_0052 - 14491990-14493108 30 1.4
08_02_1121 + 24457413-24457528,24458395-24458552,24458927-244590... 30 1.8
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 30 1.8
03_06_0266 + 32746379-32746836,32747898-32748273,32748367-327486... 30 1.8
10_08_0051 + 14489255-14490403 29 2.4
08_01_0201 + 1635964-1637010 29 2.4
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 29 2.4
02_02_0618 - 12190727-12191698 29 2.4
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 29 2.4
10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152 29 3.1
08_01_0027 - 195321-195932,197206-197415 29 3.1
06_03_0609 + 22710442-22713502,22713596-22713948 29 3.1
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 3.1
08_01_0797 + 7711772-7712869 29 4.1
10_08_0093 + 14754421-14755527,14756085-14756099 28 5.5
05_07_0056 + 27382708-27383871,27384450-27384818 28 5.5
04_04_1221 + 31845938-31847038 28 5.5
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 28 7.2
08_02_1308 - 26024491-26025405 28 7.2
10_08_0096 - 14765789-14766994 27 9.6
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 27 9.6
08_02_1302 - 25990378-25991457 27 9.6
08_01_0203 + 1639993-1641141 27 9.6
08_01_0200 + 1632883-1633913,1634620-1634677 27 9.6
07_01_0895 + 7506460-7507929 27 9.6
03_01_0559 - 4161308-4161844 27 9.6
02_02_0615 - 12152941-12153726 27 9.6
02_02_0612 - 12142192-12143253 27 9.6
>08_01_0802 - 7754561-7755628
Length = 355
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 78 HMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQPG-EPLIIL 245
+MM + G LL+ + D+ + T HK VLA S F+ L ++ G EP+ I+
Sbjct: 180 NMMQQLGDLLESKEGADVVFDVAGETFPAHKLVLAMRSPVFKAELCGPMRESGTEPISIV 239
Query: 246 KMRFNVLKCLVEFMY 290
M+ V K L++F+Y
Sbjct: 240 DMQPVVFKALLQFIY 254
>08_01_0801 - 7750548-7751708
Length = 386
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 90 RFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEV---LQKQPG-EPLIILKMRF 257
+F LLQ + D+T + VHK VLA S F+ L ++PG +P+ I+ M+
Sbjct: 190 QFANLLQSKEGADVTFDVAGEPFSVHKLVLAMRSPVFKAELCGLLREPGTQPITIVDMQP 249
Query: 258 NVLKCLVEFMY 290
V + L++F+Y
Sbjct: 250 AVFRALLQFIY 260
>06_03_1063 - 27297755-27298748,27298791-27298834
Length = 345
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = +3
Query: 9 CLIPAISEMAPVRYSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAAS 188
C I + E APV + + G++L ++ D+T + S + H+ VLAA
Sbjct: 133 CAITVLLE-APVNAAASVPAPLSDLQKHLGEMLTSKNGADITFLVSGEPVAAHRCVLAAR 191
Query: 189 STYFQEVL----QKQPGEPLIILKMRFNVLKCLVEFMYCGKTQCLEENLDELVSA 341
S F L +++ + + I M V + L+ F+Y T L E D+ V A
Sbjct: 192 SPVFMAELFGDMKEKDSQSIEIKDMEAEVFRTLLHFIY---TDTLPEQDDDDVEA 243
>10_08_0087 + 14730936-14732027
Length = 363
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQ--KQPGEP---LIIL 245
M +FG LL+ + D+ L T H+ VLAA S F+ L + G+ + I
Sbjct: 180 MNQQFGDLLETEKGADVVLEVGGQTFAAHRCVLAARSPVFRAELYGLMKEGDTAGVVCIE 239
Query: 246 KMRFNVLKCLVEFMYCGKTQCLEENLD----ELVSAAQFLKIKGLSKVTKEGL 392
+M V K L+ F+Y ++E D L+ AA ++ L + +E L
Sbjct: 240 EMEAQVFKVLLRFLYTDSLPEMKEEEDVMCQHLLVAADRYNLERLKLICEEKL 292
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 87 SRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQPGEPLIILK-MR 254
+ GKLL+ + D+T T HK VLA S F+ L ++ G ++ +K ++
Sbjct: 107 AHLGKLLESKEAADVTFYVGEDTFAAHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQ 166
Query: 255 FNVLKCLVEFMYCGKTQCLEE 317
+V K L+ F+Y +++
Sbjct: 167 PDVFKALLHFIYTDSLSIIDD 187
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +3
Query: 117 SLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL----QKQPGEPLIILKMRFNVLKCLVEF 284
+L D+T + H+ L ASS F+ + +++ + I +R+NV + ++ F
Sbjct: 584 TLSDVTFLVEGKRFYAHRIALLASSDAFRAMFDGGYREKDARDIEIPNIRWNVFELMMRF 643
Query: 285 MYCGKTQCLEENLDELVSAAQFLKIKGLSKV 377
+Y G + + +L+ AA ++GL ++
Sbjct: 644 IYTGSVEVTSDISQDLLRAADQYLLEGLKRL 674
>06_03_1064 - 27300735-27301829
Length = 364
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +3
Query: 72 SEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQE----VLQKQPGEPLI 239
S + + G LL+ ++ D+T + S + HKA+LA+ S F ++ + E +
Sbjct: 168 SSELHAYLGALLESKTGADVTFVVSGESFAAHKAILASRSPVFMAELFGAMKVKASERVE 227
Query: 240 ILKMRFNVLKCLVEFMYCGKTQCLEENLDELVSAA 344
+ M V K ++ F+Y L+ E AA
Sbjct: 228 VKDMEAPVFKAILHFVYTDTVPELDHRDGEETEAA 262
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 35.9 bits (79), Expect = 0.027
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Frame = +3
Query: 51 SLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQ 221
+L + + + + GKLL + D+ T H+ VLAA S F L K
Sbjct: 137 NLRHRASASDLNQKLGKLLDTEKGADVVFGVGGETFAAHRCVLAAQSPVFSAELFGPMKD 196
Query: 222 PGEPLIIL--KMRFNVLKCLVEFMYCGKTQCLEENLDEL 332
++ M V K L+ FMY +EE D +
Sbjct: 197 SDRAGVVRIDDMEAQVFKALLRFMYTDSLPEMEEEEDTM 235
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +3
Query: 165 HKAVLAASSTYFQEVLQKQPGEPLIILKMRFNVLKCLVEFMYCGKTQCLEENLDELVSAA 344
HK VL + + ++ +P + + + + VL L+E++Y G TQ E L L+ +
Sbjct: 225 HKVVLGSCGDFPFNLMMSRPA--IELPSVSYPVLHSLLEYIYTGSTQISEWQLVSLLELS 282
Query: 345 QFLKIKGLSKVTKEGLGIANNSE 413
K+K L +E +G S+
Sbjct: 283 SQFKVKPLVMYCEEIIGCLKMSD 305
>10_08_0088 + 14734585-14734762,14735876-14736729
Length = 343
Score = 35.5 bits (78), Expect = 0.036
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQ--KQPGEPLIILK-- 248
M +FG LL+ + D+ T H+ VLAA S F+ L + G+ +++
Sbjct: 160 MNQQFGDLLETEKGADVVFEVGGQTFAAHRCVLAARSPVFRAELYGLMKEGDTAGVVRVE 219
Query: 249 -MRFNVLKCLVEFMYCGKTQCLEEN---LDELVSAAQFLKIKGLSKVTKEGL 392
M V K L+ F+Y ++E L+ AA ++ L + +E L
Sbjct: 220 EMEAQVFKVLLRFLYTDSLPEMKEEDVMCQHLLVAADRYNLERLKLICEEKL 271
>08_01_0808 + 7828453-7829607
Length = 384
Score = 35.1 bits (77), Expect = 0.048
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +3
Query: 54 LHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL----QKQ 221
+H++ ++ GKLL+ D++ H VLAA S F L + +
Sbjct: 186 IHFQVPPTNLSRDLGKLLEDNVGADLSFEVGGDVFPAHSVVLAARSPVFMAELYGPMRAK 245
Query: 222 PGEPLIILKMRFNVLKCLVEFMY 290
GE + I M+ V K L+ FMY
Sbjct: 246 RGERIAIQDMQPVVFKALLHFMY 268
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 35.1 bits (77), Expect = 0.048
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 78 HMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL----QKQPGEPLIIL 245
+M G+LL D+T HK VLAA S F+ L + + + + I
Sbjct: 296 NMSQHIGQLLTDGKRTDITFEVDGEVFPAHKVVLAARSPVFRAQLFGPMKDKNMKRITIE 355
Query: 246 KMRFNVLKCLVEFMYCGKTQCLEE 317
M +V K L+ FMY + +EE
Sbjct: 356 DMEASVFKALLHFMYWDELPDIEE 379
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGEP----LIILK 248
+ FG+LL+ D+T + + HK +LAA S+ F+ L Q E + +
Sbjct: 177 LSENFGELLEKGEGSDVTFVVGGEKIAAHKIILAARSSVFKAELYGQMKEKRARRVTVED 236
Query: 249 MRFNVLKCLVEFMYCGKTQCLEENLDE 329
M+ +V + L+ F+Y +++ D+
Sbjct: 237 MQPDVFRGLLHFIYTDSLPDMDDLSDD 263
>11_06_0430 -
23413909-23413978,23414078-23414159,23414538-23414604,
23416186-23416647
Length = 226
Score = 34.3 bits (75), Expect = 0.083
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPG----EPLIILK 248
M G LL D+T+ T H+ VLAA S F L G E + +
Sbjct: 1 MHRHLGSLLSGGHGADITVQVGDETFAAHRCVLAARSPVFTAELFGPMGQNNKETIHVHD 60
Query: 249 MRFNVLKCLVEFMYCGKTQCLEENLDELVSAAQFLKI 359
M V + ++ F+Y +E+ DE+V+ AQ L +
Sbjct: 61 MEPRVFEAMLHFIY--NDSLPKEDDDEVVAMAQHLLV 95
>08_02_1310 - 26037025-26038074
Length = 349
Score = 34.3 bits (75), Expect = 0.083
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +3
Query: 126 DMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGE---PLIILK-MRFNVLKCLVEFMYC 293
D+ L+ T R H+AVLAA S F+ L E P + L+ M + ++ F+Y
Sbjct: 180 DVALVVGGETFRAHRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIY- 238
Query: 294 GKTQCLEENLDEL 332
T L +++DEL
Sbjct: 239 --TDALPDDIDEL 249
>07_01_0484 -
3643294-3643478,3644282-3644555,3644646-3645018,
3645177-3645233,3646034-3646458
Length = 437
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Frame = +3
Query: 93 FGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL-------QKQPGE-----PL 236
FG LL VD+ L HK VLAA ST F+ + +PGE +
Sbjct: 215 FGTLLDNHEGVDVVLSVGGERFHAHKLVLAARSTVFRSKFFDDEDGEKNEPGENDDVQEI 274
Query: 237 IILKMRFNVLKCLVEFMY 290
+I M V K ++ F+Y
Sbjct: 275 VIDDMEPKVFKAMLHFIY 292
>10_08_0079 + 14704086-14705195
Length = 369
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL--QKQPGEP---LIIL 245
M +FG LL+ + D+ T H+ VLAA S F+ L + G+ + I
Sbjct: 185 MDQQFGDLLETEKGADVVFEVGGQTFAAHRCVLAARSPVFRAALYGSMKEGDTDGVVHIE 244
Query: 246 KMRFNVLKCLVEFMYCGKTQCLEENLD 326
M V K L+ F+Y +E D
Sbjct: 245 DMEAQVFKLLLRFVYTDSLPEMETEED 271
>08_01_0794 - 7687480-7687798,7687817-7688523
Length = 341
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGE 230
++ FG+LL+ D+T + + HK VLAA S+ F+ L Q E
Sbjct: 176 ILENFGELLEKGEGADVTFVVGGEKIAAHKIVLAARSSVFKAELYGQMKE 225
>06_01_1008 - 7853089-7854147
Length = 352
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQPGEPLIILK- 248
+ G+LL + D+T + + + HK +LAA S F K+ + +K
Sbjct: 163 LQMHLGELLLSEKGADVTFVVAGESFLAHKIILAARSPVFMAEFFGPMKESSSQCVEIKD 222
Query: 249 MRFNVLKCLVEFMYCGKTQCLEE 317
+ +V K ++ F+Y G + L++
Sbjct: 223 IEASVFKAMLHFIYTGTSPELDQ 245
>11_06_0431 - 23424969-23426081
Length = 370
Score = 32.3 bits (70), Expect = 0.34
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL-------QKQPGEPLI 239
M G LL D+TL T H+ VLAA S F L + E +
Sbjct: 192 MHRHLGSLLSGGHGADVTLQVGDETFAAHRCVLAARSPVFMAELFGPMATSRHNDRETIR 251
Query: 240 ILKMRFNVLKCLVEFMYCGKTQCLEENLDELVSAAQFLKI 359
+ M V + ++ F+Y +++ DE+V+ AQ L +
Sbjct: 252 VHDMEPRVFEAMLHFIYNDSLPKVDD--DEVVAMAQHLLV 289
>10_08_0085 + 14725531-14726622
Length = 363
Score = 32.3 bits (70), Expect = 0.34
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQ--KQPGEPLIILK-- 248
M FG LL+ + D+ + + H+ VLAA S F L + G+ +++
Sbjct: 179 MNRHFGDLLETEKGADVVFEVAGESFAAHRCVLAARSPVFGAELYGLMKEGDTAGVVRIE 238
Query: 249 -MRFNVLKCLVEFMYCGKTQCLEENLD----ELVSAAQFLKIKGLSKVTKEGL 392
M V K L+ F+Y +E D L+ AA ++ L + +E L
Sbjct: 239 DMEAQVFKMLLRFVYTDSLPEMEAEEDVMCQHLIVAADRYDLQRLKLICEEKL 291
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 31.5 bits (68), Expect = 0.59
Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Frame = +3
Query: 15 IPAISEMAPVRYSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASST 194
+ A + AP + + G+LL+ + D+TL+ S H+A+LA+ S
Sbjct: 149 VAAAAPAAPANVLPPFSGRGLSLSHHLGELLRRGTGADVTLVVSGKCFPAHRAILASRSP 208
Query: 195 YFQEVL----QKQPGEPLIILKMRFNVLKCLVEFMYCGKTQCLEEN-----LDELVSAAQ 347
F L +++ + I + V ++ F+Y L++ L++AA
Sbjct: 209 VFMASLFGDMKEKSSRSVEIRDIEPQVFGAMLGFIYTDSVPELDQQDGVVVAQHLLAAAD 268
Query: 348 FLKIKGLSKVTKEGL 392
+ GL + +E L
Sbjct: 269 MCGLDGLKIMCEEKL 283
>07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644
Length = 395
Score = 31.5 bits (68), Expect = 0.59
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Frame = +3
Query: 9 CLIPAISEMAPVRYSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAAS 188
C + + ++H M F LL ++ D++ ++ HK +LAA
Sbjct: 148 CTVGVVKNRLETPKNIHINIPPSDMGRCFNNLLNLRIGCDVSFEVGDERVQAHKWILAAR 207
Query: 189 STYFQEVLQKQPGEP----LIILKMRFNVLKCLVEFMYCGKTQCLEE 317
S F+ G P +I+ + V K +V F+Y + + E
Sbjct: 208 SPVFKAQFFGPIGNPDLHTVIVEDVEPLVFKAMVNFIYSDELPSIHE 254
>08_01_0197 + 1623454-1624566
Length = 370
Score = 31.1 bits (67), Expect = 0.78
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +3
Query: 87 SRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQPGE----PLIIL 245
S F K+L+ D+T T R H+AVLAA S F L K+ E + I
Sbjct: 183 SDFAKMLKDGVGADVTFRVGEDTFRAHRAVLAARSPVFHAQLCGPMKEKKETQMQEITIQ 242
Query: 246 KMRFNVLKCLVEFMYCGKTQCLEENLDEL 332
M+ +V + + F+Y T C+ +D+L
Sbjct: 243 DMQPSVFEAFLYFIY---TDCV-PRMDDL 267
>03_06_0069 - 31449319-31450368
Length = 349
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 384 EGLGIANNSELPVFMPPVVINRPPQSLVDLHSQVPSKENEASHSTPQMTSVNSNSAPHG 560
+G N++ LPV + P+V N P S S + +S Q S ++ S+PHG
Sbjct: 5 KGASALNHASLPVVLQPIVSNPSPTS-------SSSTSSRSSAQATQQRSSSATSSPHG 56
>11_06_0415 + 23306555-23306794,23306842-23307684
Length = 360
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = +3
Query: 96 GKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQ-EVLQKQPGEP-----LIILKMRF 257
G+LL+ + D+T + H H+ VLAA S F E+L E + I M
Sbjct: 188 GRLLKTNAGADVTFDVAGHKFAAHRCVLAARSPVFMAELLGPMKEEDTESHVVAIRDMDA 247
Query: 258 NVLKCLVEFMYCGKTQCLEENLDELVSAAQFL 353
K ++ F+Y +++ E + AQ L
Sbjct: 248 RAFKAMLHFIYTDSLPNVDDG-GEAAAMAQHL 278
>10_08_0055 - 14505747-14506934
Length = 395
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 27 SEMAPVRYSLHYEDYSEHMMSRFGKLLQMQSL-VDMTLMCSSHTLRVHKAVLAASSTYFQ 203
++ A + ++ D S+H+ G LL + L D+T + + T H+ VLAA S F+
Sbjct: 170 ADAAALSVAVPPSDLSQHL----GGLLAAKELGADVTFLVAGETFTAHRCVLAARSPVFR 225
Query: 204 EVL---QKQPGEPLIIL--KMRFNVLKCLVEFMY 290
L K+ +I + +V + L+ FMY
Sbjct: 226 AELFGPMKESAATAVITVDDIEPDVFRNLLTFMY 259
>10_08_0052 - 14491990-14493108
Length = 372
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Frame = +3
Query: 96 GKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGEP-------LIILKMR 254
G LL+ D+T + +R H+ +LAA S F+ L Q E + + M
Sbjct: 187 GGLLESGDGADVTFRVAGEDVRAHRYILAARSPVFKAELFGQMKESSSSSNTVMNVDDME 246
Query: 255 FNVLKCLVEFMYCG---KTQCLEENLDELVSAAQFLKI 359
V + L+ F+Y +T+ + DELV A L +
Sbjct: 247 AEVFRALLAFIYTDALPETKTKAKQEDELVIAQHLLVV 284
>08_02_1121 +
24457413-24457528,24458395-24458552,24458927-24459042,
24459735-24460400
Length = 351
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 84 MSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEV 209
+S ++LQ L D+T+ + ++ H+A+LA+ S F+ +
Sbjct: 173 LSSLARMLQEGILTDITINATDGSIMAHRAILASRSPVFRSM 214
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 276 VEFMYCGKTQCLEENLDELVSAAQFLKIKGLSKVTKEGLGIANNSELPVFMPPVVIN 446
++ YC + L ++ EL+ + +FL + G S KE L + +P+ +P +++
Sbjct: 696 LDLSYCRSLRSLPHSI-ELIDSLEFLIVVGCSDQLKEYLRKSQFKNIPISLPHFIVH 751
>03_06_0266 +
32746379-32746836,32747898-32748273,32748367-32748640,
32750605-32750789
Length = 430
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 93 FGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL 212
FG LL Q VD+ + H+ VLAA S++F+ L
Sbjct: 207 FGTLLDNQEGVDVICNVAGEKFHAHQLVLAARSSFFRSEL 246
>10_08_0051 + 14489255-14490403
Length = 382
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Frame = +3
Query: 96 GKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGEP------LIILKMRF 257
G LL+ D+T + +R H+ +LAA S F+ L Q E + + M
Sbjct: 191 GGLLESGDGADVTFHVAGEEVRAHRYILAARSPVFKAELFGQMKESSSSNTVVNVDDMEA 250
Query: 258 NVLKCLVEFMYCG---KTQCLEENLDELVSAAQFL 353
V + L+ F+Y +T+ DELV A L
Sbjct: 251 EVFRALLVFIYTNALPETKTKANQEDELVIAQHLL 285
>08_01_0201 + 1635964-1637010
Length = 348
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Frame = +3
Query: 18 PAISEMAPVRYS-LHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASST 194
P +S AP+ + + D + H+ G+LL ++S D+T H+ VLA S
Sbjct: 143 PRVSAAAPLTAADVPPPDLAAHL----GRLLDLKSHADVTFDVRGVQFAAHRVVLAMRSA 198
Query: 195 YFQEVL----QKQPGEPLIILKMRFNVLKCLVEFMYCGKTQCLEE 317
F L + G + + M+ V K L+ F+Y +++
Sbjct: 199 VFAAELFGPMRNNAGGAIKVGDMQPAVFKVLLGFIYTDTLAAMDD 243
>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 489 SKENEASHSTPQMTSVNSNSAPHGLERNNRDMVVRIPFDIEN 614
+KE + QM + S S+ +GLE NN+++V+ FD ++
Sbjct: 1404 TKEANEEYDFGQMFELLSESSEYGLECNNQELVLEKLFDTKS 1445
>02_02_0618 - 12190727-12191698
Length = 323
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 126 DMTLMCSSHTLRVHKAVLAASSTYFQEV----LQKQPGEPLIILKMRFNVLKCLVEFMY 290
D+T+ R HK +LAA S+ F+ + + + + I M V + L+ FMY
Sbjct: 189 DVTIYVGKERFRAHKCILAARSSVFRALFFGAMIAETPRTIEIEDMEAGVFRLLLHFMY 247
>01_03_0206 -
13783169-13783651,13783761-13783903,13783962-13784128,
13784641-13785149,13786031-13786312,13786397-13786792,
13787232-13787504
Length = 750
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 48 YSLHYEDYSEHMMSRFGKLLQMQSLVD 128
+ H+E Y+ + SRFG+L+ S++D
Sbjct: 87 HCFHHESYAAYCASRFGRLINRPSILD 113
>10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152
Length = 435
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Frame = +3
Query: 96 GKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQPGEPLIILK---MRF 257
G LL+ D+T + + H+ +LAA S F+ L K+ I+K M
Sbjct: 251 GGLLESGDGADVTFHVAGEEVPAHRYILAARSPVFKAELFGQMKESSSSNTIVKVDDMEA 310
Query: 258 NVLKCLVEFMYCG---KTQCLEENLDELVSAAQFL 353
V + L+ F+Y +T+ DELV A L
Sbjct: 311 EVFRALLAFIYTDALPETKTKANQEDELVIAQHLL 345
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 72 SEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEV----LQKQPGEPLI 239
S+ + ++L D+T+ + L+ HKA+LA+ S F+ + L+++ +
Sbjct: 91 SKSSLGCLSRMLTESIHADVTINTTDGVLKAHKAILASCSPVFESMFLHDLKEKESSTIN 150
Query: 240 ILKMRFNVLKCLVEFMY 290
I M L+ F+Y
Sbjct: 151 INDMCLESCSALIGFIY 167
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 295 PQYINSTRHFKTLNLIFNIIRG---SPGCFCNTS*K*VLLAANTALCT 161
PQ++ R + LNL FN G S G F N S V + N LCT
Sbjct: 698 PQFLTLLRSLQVLNLSFNNFHGVVPSSGIFANAS--VVSIEGNDHLCT 743
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 456 QSLVDLHSQVPSKENEASHSTPQMTSVNSNSAPHGL-ERNNRDMVVRIPFDIENGGSSMI 632
Q LV+ S + +S P +VNS L E NN+ M + PF+I +S +
Sbjct: 1597 QPLVNAESHTNYYAKKPINSQPSSDAVNSGKLVTSLSEENNKTMPISTPFNIGTWDNSQL 1656
Query: 633 D 635
+
Sbjct: 1657 N 1657
>08_01_0797 + 7711772-7712869
Length = 365
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLV--DMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGE----PLII 242
+ FGKLL+ + V D+ + HK VLAA S F+ + E + I
Sbjct: 176 LSEHFGKLLEEEEDVGRDVVFSVEGESFAAHKLVLAARSPVFKAEFYGEMIERGTFSIDI 235
Query: 243 LKMRFNVLKCLVEFMY 290
M+ +V + L+ F+Y
Sbjct: 236 KDMQPSVFRALLHFIY 251
>10_08_0093 + 14754421-14755527,14756085-14756099
Length = 373
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 81 MMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYF 200
M +F LL + D+T T H+ VLAA ST F
Sbjct: 182 MHRQFTDLLLTKVGADVTFQVGGETFAAHRCVLAARSTVF 221
>05_07_0056 + 27382708-27383871,27384450-27384818
Length = 510
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 66 DYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYF 200
D+S+ S K ++ Q+L+D+ S + R +AV+AASS F
Sbjct: 101 DFSDPNKSSAEKDIKRQTLLDLIDYVDSSSSRFSEAVIAASSRMF 145
>04_04_1221 + 31845938-31847038
Length = 366
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 93 FGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL---QKQPGEPLI-ILKMRFN 260
F +LQ D+T R HK VLA S F+ L K+ G I I M
Sbjct: 184 FENMLQDGEGSDVTFTVGGQEFRAHKCVLAFRSPVFKAELFGPMKENGTQCIKIDDMEPE 243
Query: 261 VLKCLVEFMY 290
V + L+ F+Y
Sbjct: 244 VFEALLHFIY 253
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 459 SLVDLHSQ-VPSKENEASHSTPQMTSVNSNSAPHGLERNNRDMVVRIPFDIENGGSS 626
S V HS+ VPS +E++ + + S S+ PH +E NN+ P ++ G SS
Sbjct: 312 SFVRQHSRRVPSGNDESTEALERANSHPSSLLPHNIE-NNQQFNGVFPSEVWGGISS 367
>08_02_1308 - 26024491-26025405
Length = 304
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +3
Query: 87 SRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGE----PLIILKMR 254
+ G LL D++ + T H+AVLAA S F+ L E + + +
Sbjct: 116 AHLGGLLDRGEGTDVSFLVDGETFPAHRAVLAARSPVFRAELLGSMAESKMSSITLHDIE 175
Query: 255 FNVLKCLVEFMYCGKTQCLEENLDELVSAA 344
+ L+ F+Y K ++ D+L AA
Sbjct: 176 PLTFRALLRFIYTDKLPA-DDGGDQLKMAA 204
>10_08_0096 - 14765789-14766994
Length = 401
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 93 FGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL 212
FG+LL + D+ T H+ VLAA S F L
Sbjct: 192 FGRLLDTKLGADVAFEVGGETFAAHRCVLAARSKVFDAEL 231
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 295 PQYINSTRHFKTLNLIFNIIRG---SPGCFCNTS*K*VLLAANTALC 164
P+++ S + K LNL FN + G G F N S V L +N LC
Sbjct: 591 PEFLESFQLLKNLNLSFNNLSGMVPDKGIFSNAS--AVSLVSNDMLC 635
>08_02_1302 - 25990378-25991457
Length = 359
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 126 DMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGE---PLIIL-KMRFNVLKCLVEFMYC 293
D++ T H+AVLAA S F+ L E P + L + + L+ F+Y
Sbjct: 182 DVSFSVGGETFHAHRAVLAARSPVFRVELLGSTAEATMPCVTLHDIEPTTFRALLHFVYT 241
Query: 294 GKTQCLE 314
Q +E
Sbjct: 242 DVLQIIE 248
>08_01_0203 + 1639993-1641141
Length = 382
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 78 HMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQPGEP-------L 236
+++ LL + D+TL+ H+AVLA S F+ L E +
Sbjct: 177 NILGHLAGLLGDKGTADVTLVVRGEEFAAHRAVLAMRSPVFKAALYGPMKESTDANAGRV 236
Query: 237 IILKMRFNVLKCLVEFMYCGKTQCLEENLDELVSAAQFL 353
I + V + L+ F+Y T +++ D+ AQ +
Sbjct: 237 AIDSVEPAVFRALLHFIYTDTTAAMDDLDDDDDDKAQMI 275
>08_01_0200 + 1632883-1633913,1634620-1634677
Length = 362
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 126 DMTLMCSSHTLRVHKAVLAASSTYFQEVL-----QKQPGEPLIILKMRFNVLKCLVEFMY 290
D+T T H+ +LAA S F+ L +K + I+ ++ V K L+ F+Y
Sbjct: 179 DVTFAVQGETFTAHRLMLAARSPVFKAELYGAMKEKDADHVIAIVDVQPAVFKALLHFIY 238
>07_01_0895 + 7506460-7507929
Length = 489
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 454 GGRLITTGGIKTGSSLLLAMPKPSLVTLDSPLI 356
GGRL+ G L +P+P L+ L SP +
Sbjct: 135 GGRLMMNAGDMASLKTLRRLPEPPLLRLQSPTV 167
>03_01_0559 - 4161308-4161844
Length = 178
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 243 LKMRFNVLKCLVEFMYCGKTQCLEENLDELVSAA-QFLKIKGLSKVTKEGLGI 398
L MR + CLVE M+ G CL L +AA +L++ G +V LG+
Sbjct: 106 LYMRLMLRPCLVEDMHRGTLACLVAAPVLLHTAAVAYLQLMGRGQVAFAALGV 158
>02_02_0615 - 12152941-12153726
Length = 261
Score = 27.5 bits (58), Expect = 9.6
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Frame = +3
Query: 18 PAISEMAPVRYSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTY 197
P S+ P E + G LL+ D+T HK VLAA S+
Sbjct: 151 PICSKETPAMPKPSVEVPPGDLHQHLGDLLKNMDGADVTFDVGQERFSAHKCVLAARSSV 210
Query: 198 FQEVL----QKQPGEPLI-ILKMRFNVLKCLVEFMYCGKTQCLEENLDELVSA 341
F+ + + +P I I M V + + F+Y T L + ++V A
Sbjct: 211 FEAMFFGATRAKPRRSNIKIEDMEAGVFRSFLHFVY---TDLLPDTSQDVVMA 260
>02_02_0612 - 12142192-12143253
Length = 353
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Frame = +3
Query: 102 LLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQE----VLQKQPGEPLIILKMRFNVLK 269
LL+ D+T HK +LAA S+ F+ + + + I + V +
Sbjct: 179 LLKNMDSTDVTFNVGQDIFSAHKCILAARSSVFRAEFFGAMSAKARRTIKIEDIEAGVFR 238
Query: 270 CLVEFMYCGKTQCLEENL---DELVSAAQFLKIKGLSKVTKEGL 392
L+ F+Y +N+ LV AA + L + +E L
Sbjct: 239 ALLHFIYTDSLPETAQNIVMAQHLVVAADRYNVGRLKLICEEKL 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,978,681
Number of Sequences: 37544
Number of extensions: 319972
Number of successful extensions: 1042
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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