Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n13
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          90   1e-20
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      76   3e-16
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    26   0.36 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    26   0.36 
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      25   0.82 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 90.2 bits (214), Expect = 1e-20
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
 Frame = +3

Query: 33  MAPVRYSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVL 212
           MA   Y L + +Y  +M S F +LLQ ++ VD+TL C+  +L+ HK VL+A S+YFQ++L
Sbjct: 6   MAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLL 65

Query: 213 QKQP-GEPLIIL--KMRFNVLKCLVEFMYCGKTQCLEENLDELVSAAQFLKIKGLSKV 377
              P   P II+   + FN LK ++EF+Y G+    +  L  L+  A  LKIKGL +V
Sbjct: 66  LSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEV 123


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 75.8 bits (178), Expect = 3e-16
 Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
 Frame = +3

Query: 48  YSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMCSSHTLRVHKAVLAASSTYFQEVLQKQP- 224
           + L + +Y   + S F  L   +  VD+TL C   +L+ H+ VL+A S YF+E+L+  P 
Sbjct: 7   FCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPC 66

Query: 225 GEPLIILK-MRFNVLKCLVEFMYCGKTQCLEENLDELVSAAQFLKIKGLSK 374
             P+I+L+ + F+ L  LVEF+Y G+    + +L   +  A+ L++ GL++
Sbjct: 67  KHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQ 117


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 403 ITASCPSLCRPLLSIDRRSPLLIC 474
           +   C  LC P   I+ +SPLL C
Sbjct: 39  VNGHCSHLCLPAPRINSKSPLLSC 62


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 403 ITASCPSLCRPLLSIDRRSPLLIC 474
           +   C  LC P   I+ +SPLL C
Sbjct: 39  VNGHCSHLCLPAPRINSKSPLLSC 62


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 48  YSLHYEDYSEHMMSRFGKLLQMQSLVDMTLMC 143
           + L + +Y   + S F  L   +  VD+TL C
Sbjct: 7   FCLRWNNYQSSITSAFENLRDDEDFVDVTLAC 38


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  VLFLPFLKWLPYGTASIMKIILN 78
           + FL  L W PY T +++ +  N
Sbjct: 287 IFFLFLLAWTPYATVALIGVYGN 309


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 10  VLFLPFLKWLPYGTASIM 63
           + FL  L W PYG  S++
Sbjct: 279 ICFLYVLSWTPYGVMSMI 296


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  VLFLPFLKWLPYGTASIMKIILN 78
           + FL  L W PY T +++ +  N
Sbjct: 287 IFFLFLLAWTPYATVALIGVYGN 309


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 426 MPPVVINRPPQSLVDLHSQVPSKENEASHSTPQMT 530
           +PPV +    ++L  L   +  K   AS   P+MT
Sbjct: 224 LPPVWVGGESEALARLERHLERKAWVASFGRPKMT 258


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 615 HSRCQKES*RPCPCYFFLS 559
           HSRC  E  + C C  F++
Sbjct: 477 HSRCPPEIHKSCICVRFIA 495


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 615 HSRCQKES*RPCPCYFFLS 559
           HSRC  E  + C C  F++
Sbjct: 477 HSRCPPEIHKSCICVRFIA 495


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 434 GRHKDGQLAVIGNAQTLFSNFR 369
           G H+DG L  + N   +F + R
Sbjct: 522 GNHEDGYLIGVNNLIDIFQDIR 543


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 434 GRHKDGQLAVIGNAQTLFSNFR 369
           G H+DG L  + N   +F + R
Sbjct: 437 GNHEDGYLIGVNNLIDIFQDIR 458


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 434 GRHKDGQLAVIGNAQTLFSNFR 369
           G H+DG L  + N   +F + R
Sbjct: 756 GNHEDGYLIGVNNLIDIFQDIR 777


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,152
Number of Sequences: 438
Number of extensions: 3351
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)