Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n12
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    99   1e-21
AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    31   0.93 
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine r...    28   4.9  
Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   6.5  
U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    27   8.6  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    27   8.6  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =   99 bits (238), Expect = 1e-21
 Identities = 50/141 (35%), Positives = 85/141 (60%)
 Frame = +2

Query: 221 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 400
           +V+++GAA  IG  + L LK++  V+ L LYD  +   G   +LS++     V+A  G  
Sbjct: 30  KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNT-PGVAADLSHIDSNAKVTAHTGPK 88

Query: 401 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 580
            L  A+ +++++V+ + +PRKPG TR+ +   NA +++ L   IA  + +A +AI TNP+
Sbjct: 89  ELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPV 148

Query: 581 NYLIPFASTVMYKYGCYNPSK 643
           N  +P AS V+ K G Y+P +
Sbjct: 149 NSTVPIASEVLKKAGVYDPKR 169


>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 171 NKQQNIFWAIFFSILL*NMFFNITFYYFCDFFI 73
           N  QNIF+ +F+  L+  + F  TF+ F DF +
Sbjct: 376 NVFQNIFFQLFYCALMTGLTFGYTFFKFHDFLM 408


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 251 YHLLLQ*QILVHFFFVRSVCFSLAALQINNKIFFGPFFFQYFCKICFL 108
           Y LL   QI   FFF     F +    + + I F  FF+++F  + F+
Sbjct: 35  YQLLRPSQISFLFFFSIFYVFKMYVQNVKDHITFAVFFWKFFFILAFI 82


>AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 9 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 164 NKIFFGPFFFQYFCKICFLTSHFTIFVTFLLRGHDICCRY*LVLSSLI 21
           N I F   FF     +C +  ++ I VT+      +CC Y ++L  +I
Sbjct: 219 NNIVFSIGFFNTIVNVCLILDNYDIPVTY-KNIASVCCDYAILLYGII 265


>Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical
           protein R07B5.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 155 IFCCLFATQLKKNTLILQKRNVQVSVIGAA 244
           ++CC F  + +KN +++QK  +   ++GAA
Sbjct: 189 VYCCAFKNKTEKN-IMIQKAILNTVIVGAA 217


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 215 NVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRI 331
           NV V V+G+A+ + SY  L   +   +  +H+ DDD+ +
Sbjct: 428 NVTVIVLGSANLLISYFFLPESKGVNLDDVHVNDDDENV 466


>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -3

Query: 158 IFFGPFFFQY----FCKICFLTSHFTIFVTFL 75
           + + PFF  Y    FCK C   +H  +F+T+L
Sbjct: 272 VCWAPFFTMYVLVQFCKDCSPNAHIEMFITWL 303


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -3

Query: 158 IFFGPFFFQY----FCKICFLTSHFTIFVTFL 75
           + + PFF  Y    FCK C   +H  +F+T+L
Sbjct: 398 VCWAPFFTMYVLVQFCKDCSPNAHIEMFITWL 429


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -3

Query: 158 IFFGPFFFQY----FCKICFLTSHFTIFVTFL 75
           + + PFF  Y    FCK C   +H  +F+T+L
Sbjct: 392 VCWAPFFTMYVLVQFCKDCSPNAHIEMFITWL 423


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
            protein Y46G5A.6 protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 215  FFFVRSVCFSLAALQINNKIFFGPFFFQYF 126
            FF   ++ F   +LQI    +F P FFQ+F
Sbjct: 939  FFHFENMHFFKFSLQIWRHFYFQPIFFQFF 968


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -3

Query: 212 FFVRSVCFSLAALQINNKIFFG-------PFFFQYFCKICFLTSHFTIFVTFLLRGHDIC 54
           F + +V F L    +NNKI           F   +FC  C+      I VT L+  H +C
Sbjct: 53  FVLATVAFILQVRNVNNKISMALLCDGICKFIGPWFCYHCYNLLLTMITVTGLINLHTLC 112

Query: 53  CR 48
            R
Sbjct: 113 YR 114


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -3

Query: 212 FFVRSVCFSLAALQINNKIFFG-------PFFFQYFCKICFLTSHFTIFVTFLLRGHDIC 54
           F + +V F L    +NNKI           F   +FC  C+      I VT L+  H +C
Sbjct: 53  FVLATVAFILQVRNVNNKISMALLCDGICKFIGPWFCYHCYNLLLTMITVTGLINLHTLC 112

Query: 53  CR 48
            R
Sbjct: 113 YR 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,959
Number of Sequences: 27780
Number of extensions: 319826
Number of successful extensions: 897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)