Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n12
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 210 FCKISVFFFSCVANKQQNIFWAIFFSILL*NMFFNITFYYFCDFFIAWS*YLL*VLIGV 34
           FC + + FF C+A     I WA   +     +   I +Y  C + I W+     + +GV
Sbjct: 453 FCLLFLMFFECIA-----ISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAICVGV 506


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 210 FCKISVFFFSCVANKQQNIFWAIFFSILL*NMFFNITFYYFCDFFIAWS*YLL*VLIGV 34
           FC + + FF C+A     I WA   +     +   I +Y  C + I W+     + +GV
Sbjct: 506 FCLLFLMFFECIA-----ISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAICVGV 559


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 641 WTDCNTRIYTLQYLQKVSDNLWG 573
           + D   ++Y   + Q+ S NLWG
Sbjct: 467 FADRGMKVYYYFFTQRTSTNLWG 489


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 105 ITFYYFCDFFIAWS*YLL*VLIGV 34
           + F  F  F +AW+ Y    LIGV
Sbjct: 283 VAFTIFFLFLLAWTPYATVALIGV 306


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 105 ITFYYFCDFFIAWS*YLL*VLIGV 34
           + F  F  F +AW+ Y    LIGV
Sbjct: 283 VAFTIFFLFLLAWTPYATVALIGV 306


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 577 GVGRYSYKRFLILSCNG 527
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 577 GVGRYSYKRFLILSCNG 527
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 577 GVGRYSYKRFLILSCNG 527
           G   Y  +R LILSC G
Sbjct: 223 GTVNYLMRRHLILSCQG 239


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 577 GVGRYSYKRFLILSCNG 527
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 248 DIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDTN 403
           DI S++S      + VS  +  D D+ +  T   L  +P G SV +  G+ N
Sbjct: 346 DIDSHMS----DRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENN 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,569
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)