Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9n08
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0161 - 18757122-18757331,18757931-18758488 31 0.73
11_01_0799 + 7035380-7036148,7036587-7037080 31 1.3
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219 30 2.2
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154... 30 2.2
01_01_0145 + 1327172-1327362,1327491-1328169 29 2.9
12_01_0731 - 6516894-6517473,6517485-6519574 29 3.9
12_01_0727 + 6446283-6449300 29 3.9
04_02_0008 + 8473198-8475523,8475618-8475967 29 3.9
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 5.1
12_01_0741 + 6649988-6653065 28 6.8
01_01_0418 - 3142659-3145622 28 9.0
>01_05_0161 - 18757122-18757331,18757931-18758488
Length = 255
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 230 LPGPCPHVVANSLTSVQPLNNGYT*FLES 144
LP P PHV++N + +Q L N YT L S
Sbjct: 180 LPRPTPHVISNIIKIMQNLRNAYTLALPS 208
>11_01_0799 + 7035380-7036148,7036587-7037080
Length = 420
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 267 GESINKTVKKDKDA---DNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQ--GYRQA 431
G+ K+ KK K+ NLL + +++ +++E P DC S+ Q G
Sbjct: 333 GKPRGKSAKKLKELAGITNLLSSGSILKESDFASDVHSETDSTPSDCSVSLLQKMGVEMC 392
Query: 432 KCSFLEIGTQKFGDDILDLV 491
S E+ K G LDLV
Sbjct: 393 GLSLEEVAESKLGGQKLDLV 412
>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
Length = 306
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 348 EYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKF 467
+ +E Y++ CP D C V Q + QAK L +QKF
Sbjct: 225 DLEECPYDDCDNCPSDNNCKVLQAFSQAKNLALVADSQKF 264
>02_01_0232 +
1543597-1543800,1544189-1544377,1544695-1544859,
1545199-1545459,1546059-1546271,1546365-1546587,
1547974-1548149
Length = 476
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 383 LSQRLHMLCISGIQTSQVQLPRNRY 457
L QRL +LCI G+ T +++ R+RY
Sbjct: 445 LMQRLTVLCIRGVSTYPIKIIRSRY 469
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 417 PEIQSICSLW-DRACPRCTKPLGIPRVR 337
P S W DRACP C +P+G R R
Sbjct: 70 PRAAPAASSWMDRACPSCNEPIGDIRCR 97
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 585 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 668
NS G I P+ G+ L ++LSNNNL
Sbjct: 633 NSISGNIPPSICDGIKSLQLIDLSNNNL 660
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 585 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 668
NS G I P+ G+ L ++LSNNNL
Sbjct: 626 NSISGNIPPSICDGIKSLQLIDLSNNNL 653
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 477 ILDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLS 656
+L+L V N D PI L + LGL + N+ + + P +H+L +N S
Sbjct: 383 MLNLSVNNLDGSIPIELVNISSLSLGLD------LSNNKLSGLIPQQVGTLHNLGHLNFS 436
Query: 657 NNNL 668
NN L
Sbjct: 437 NNQL 440
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -3
Query: 438 CTWLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHI 325
C L C P IQ + R CP C P G VR I
Sbjct: 752 CFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREVKI 789
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 585 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 668
NS +G + ++ + +LY +NLSNN L
Sbjct: 464 NSFVGIVELTSYSKLQNLYVLNLSNNKL 491
>01_01_0418 - 3142659-3145622
Length = 987
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 585 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 668
N+ IG + ++F + DL+++NLSNN L
Sbjct: 431 NNFIGTLELSSFWKLPDLFSLNLSNNKL 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,010
Number of Sequences: 37544
Number of extensions: 392000
Number of successful extensions: 1238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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