Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n05
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    31   0.16 
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    29   0.63 
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    29   0.63 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   2.6  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   4.5  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   5.9  

>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 418 DKKDRTDFIKRERKMMTNL--VEKPETRFKVDIVKEERESVVDDLSRFLLNEKHFVEWQK 591
           DK   T  I    K  T    VEK +T     I ++   +++  LS+ L NEK++ EW+K
Sbjct: 303 DKMQCTQVIHNGIKAGTKAKDVEKSQTL----ICRKSMMNLLHQLSQSLTNEKNYYEWKK 358

Query: 592 IKAKQVKE 615
           +  K+ ++
Sbjct: 359 LNIKRCQQ 366


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
 Frame = -1

Query: 675 FFSLAFFKHFRIFMLHILIRFLHL------LSFYLLPFYKMLLIQ*KSRQIINNRLTFLF 514
           FF   +    R  M  + IR+  L       SFYLL   ++L +   S ++    L +  
Sbjct: 185 FFGRKYDPFLRSRMFTLTIRYFLLQKNRLRTSFYLLKHMELLALP-ASYELKTTLLEWFL 243

Query: 513 HYVYFESCFRFFY*ICHHLSFPFNKICSIFFIEG 412
               FE+  + F  +C    FP  K+  +  + G
Sbjct: 244 RKRKFETAQKIFLSLCFSQHFPSEKLLMVLLLHG 277


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +1

Query: 487 ETRFKVDIVKEERESVVDDLSRFLLNEKHFVEWQKIKAKQVKETYEYMKHKY 642
           +T  +   V +  E V  ++ R  L   +   W++I +++ +   E++KHKY
Sbjct: 203 DTLIQFSCVNQFEEPVTSNIQR--LTSLYQTRWKRINSEEKRNWEEWIKHKY 252


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -1

Query: 297 FPIVFN-VFGSIA*SYEKVFFIIDKFITQ*YRSKNKAVFHHFPEFVSFPFYWSFQSFRKP 121
           FP++++ +F ++   +  VF      ++  +R       HH    +   FYW F  F   
Sbjct: 29  FPLLYSFIFATL---HAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFF-- 83

Query: 120 FF*YFRHFISCVII--YKRFVCLFFLYF 43
           FF + R F   + I  Y   V  FF +F
Sbjct: 84  FFSHCRRFHIAIFIHPYDSNVVPFFCFF 111



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -1

Query: 675 FFSLAFFKHFRIFMLHILIRFLHLLSFYLLPFYKMLLIQ*KSRQIINNRLTFLFHYVYFE 496
           FF   FF H R F  HI I F+H     ++PF+                L   F +++  
Sbjct: 79  FFFFFFFSHCRRF--HIAI-FIHPYDSNVVPFFCFFFYF---------SLFSFFSFLFTS 126

Query: 495 SCFRFFY*ICHH 460
             F FF+ +C H
Sbjct: 127 LHFNFFFRLCRH 138


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 130 ERLERPIKWEAHEFGEMMKNGF--VLASVLLSYKFINDEKHFLIRSSNAAEHIKNNWKYL 303
           +R  R + W   +FG + +N F   L+ +    +F  D+ H           I+  + +L
Sbjct: 392 DRSYRDLPWRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTPDQVRSEIEGCFDFL 451

Query: 304 SE 309
            E
Sbjct: 452 KE 453


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 433 TDFIKRERKMMTNLVE--KPETRFKVDIVKEERESVVDDLSRFLLNEKHF 576
           T FI  E  ++ N +   +P+TR  ++++K+ +       + F+LN+ +F
Sbjct: 121 TRFINNELTILENPINLSQPKTRILLEVLKQHKLGHEYGKALFVLNDNYF 170


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 451 ERKMMTNLVEKPETRFKVDIVKEERESVVDDLSRFLLNEKHFVEWQK 591
           E K   +    PE +F  D +  + E V D++ RF+       +W K
Sbjct: 131 EAKRKQDSYNNPELKFWEDYLGLKMEGVHDEVIRFIFTNIDEKDWNK 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,591
Number of Sequences: 5004
Number of extensions: 64786
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)