Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n05
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    31   0.86 
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    31   0.86 
01_06_0201 - 27477392-27479728                                         30   1.5  
11_06_0050 + 19631164-19631987,19632103-19634023                       29   3.5  
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    28   6.1  

>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 421 KKDRTDFIKRERKMMTNLVEKPETRFKVDIVKEERESVVDDLSR 552
           K+  TD ++  R++   +VE    +  ++ ++EER+ + DD++R
Sbjct: 133 KEQETDVVELHRQLKIKMVEIDMLKMTINSLQEERKKLQDDVAR 176


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 421 KKDRTDFIKRERKMMTNLVEKPETRFKVDIVKEERESVVDDLSR 552
           K+  TD ++  R++   +VE    +  ++ ++EER+ + DD++R
Sbjct: 438 KEQETDVVELHRQLKIKMVEIDMLKMTINSLQEERKKLQDDVAR 481


>01_06_0201 - 27477392-27479728
          Length = 778

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 70  SFINYHTGYEMAEILKEWLTERLERPIKWEAHEFGEMMKNGFVLASVLLSYKFINDEKHF 249
           SF  Y TG + A  L  W T  +E+ + W A+    +  +G  L+        ++DEK F
Sbjct: 51  SFGFYETG-DNAFSLSIWFTNTVEKTVVWAANSESPVNGHGSKLSFTQEGSLVLSDEKGF 109

Query: 250 LIRSS 264
           ++  S
Sbjct: 110 VVWDS 114


>11_06_0050 + 19631164-19631987,19632103-19634023
          Length = 914

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +1

Query: 454 RKMMTNLVEKPETRFKVDIVKEERESVVDDLSRFLLNEKHFVEWQKIKAKQVKETYEYM 630
           + M+  L EK  T   ++    E   ++D+L +FL N+++ V    I +K V +T +Y+
Sbjct: 239 KNMLRQLDEK--TYLNINGETWEEVQLIDELRKFLQNKRYIVVIDDIWSKSVWKTIKYV 295


>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 460 MMTNLVEKPETRFKVDIVKEERESVVDDLSRFLLNEKH--FVEWQKIKAKQVKETYEYMK 633
           ++ NL++K E R +  I++ E +  +  ++  L  E H  F+ W   K  Q K  +    
Sbjct: 384 IILNLIKKRERRPRESILRSEFDKAIKIINNDLPGENHLRFLHWDLHKNSQSKLYFRKST 443

Query: 634 HKYSKVLK 657
           +    +LK
Sbjct: 444 NALQMLLK 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,507
Number of Sequences: 37544
Number of extensions: 334930
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)