Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n05
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.4  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 499 KVDIVKEERESVVD-DLSRFLLNEKHFVEWQKIKAKQVKETYEYMKHKYS 645
           K+D+    +E  +      +L+ ++   E++K+K K + E   Y+K+ ++
Sbjct: 24  KIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHT 73


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 214 LSYKFINDEKHFLIRSSNAAEHIKNNWKYLSEW 312
           L Y F +DE+      S   +H KN    + +W
Sbjct: 44  LDYDFGSDERRQAAMQSGEYDHTKNYPFDVDQW 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,968
Number of Sequences: 438
Number of extensions: 4506
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)