Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n02
         (376 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q88EV6 Cluster: D-alanine--D-alanine ligase A; n=3; Pse...    33   1.3  
UniRef50_Q5UNZ6 Cluster: Putative BTB/POZ domain-containing prot...    31   5.2  
UniRef50_Q1ARB4 Cluster: DNA methylase N-4/N-6; n=1; Rubrobacter...    31   9.1  

>UniRef50_Q88EV6 Cluster: D-alanine--D-alanine ligase A; n=3;
           Pseudomonas putida|Rep: D-alanine--D-alanine ligase A -
           Pseudomonas putida (strain KT2440)
          Length = 352

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 257 PPPLRQRIHGLHPQ-FRCLELSRYXRXQFFLS 165
           PP +  RI  L  Q FRCLEL  Y R  FFL+
Sbjct: 268 PPDIVARIQALSVQAFRCLELKGYARVDFFLT 299


>UniRef50_Q5UNZ6 Cluster: Putative BTB/POZ domain-containing protein
           L742; n=1; Acanthamoeba polyphaga mimivirus|Rep:
           Putative BTB/POZ domain-containing protein L742 -
           Mimivirus
          Length = 449

 Score = 31.5 bits (68), Expect = 5.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -3

Query: 227 LHPQFRCLELSRYXRXQFFLSXNTYLVXYXCTHNY-LTIRVKLSKIVI---LWSNENIFR 60
           L  Q+ C  L  Y           YL+ + C+HNY L   + +S   +   L +++NI+ 
Sbjct: 152 LELQYYCYNLRNYFIKLEHFKYMDYLLDHYCSHNYRLVTDMNISDNTVKTTLENSQNIYA 211

Query: 59  FFFRHLI 39
            FF++ I
Sbjct: 212 IFFKNRI 218


>UniRef50_Q1ARB4 Cluster: DNA methylase N-4/N-6; n=1; Rubrobacter
           xylanophilus DSM 9941|Rep: DNA methylase N-4/N-6 -
           Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
          Length = 266

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 269 WLRCPPPLRQRIHGLHPQFRCLELSR 192
           W   PPP  +R+HG HP  + L L R
Sbjct: 173 WRMPPPPSAERLHGYHPTQKPLRLVR 198


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,300,055
Number of Sequences: 1657284
Number of extensions: 4144979
Number of successful extensions: 10375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10375
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)