Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n02
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0098 - 28334865-28336114,28336228-28336357                       29   1.2  
07_03_1367 + 26072270-26072374,26074047-26074724                       29   1.2  
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    27   4.8  

>11_08_0098 - 28334865-28336114,28336228-28336357
          Length = 459

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 260 CPPPLRQRIHGLHPQF---RCLELSRYXRXQFFL 168
           CP  LR R+ GLHP     RC   S Y R   +L
Sbjct: 99  CPACLRDRLAGLHPPSDLRRCKSFSYYARSSSYL 132


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 284 SYHPCWLRCPPPLRQRIHGLHPQFRCL 204
           S H C ++ PPP    IHGL P +  L
Sbjct: 42  STHKCLVKPPPPSHFTIHGLWPSYNKL 68


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 278 HPCWLRCPPPLRQR 237
           +P W RCPPP R+R
Sbjct: 71  NPPWQRCPPPPRRR 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,640,740
Number of Sequences: 37544
Number of extensions: 105898
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)