Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n02
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm rec...    30   0.47 
U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm recep...    30   0.62 
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   1.4  

>AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 63 protein.
          Length = 336

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -3

Query: 173 FLSXNTYLVXYXC-THNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRSI 27
           FL+   YLV   C    +L ++ +L+K+ I  SN+++ R FF+ LI +SI
Sbjct: 204 FLNSLGYLVILYCGVQMHLNMKKELAKLSI--SNQDLQRQFFKALIAQSI 251


>U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 64 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 173 FLSXNTYLVXYXC-THNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRSI 27
           FL+   YLV   C    +L ++ +L+K+ I  SN+ + R FF+ LI +SI
Sbjct: 204 FLNSLGYLVILYCGVQMHLNMKKELAKLSI--SNQELQRQFFKALIAQSI 251


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = -2

Query: 174 FFIT*HIFSTLXL----YA*LFNNSCETLQNCNFMVKRKYFSIFLP 49
           FFI+ H+  +L L    Y+ LF+ + +TLQ+C F    ++F  FLP
Sbjct: 65  FFISIHLVLSLLLKIVIYS-LFSGAPQTLQSCEFSFPSEFFD-FLP 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,982,893
Number of Sequences: 27780
Number of extensions: 108789
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)