Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n01
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313...    29   1.7  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    26   9.2  
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740...    26   9.2  

>02_05_1165 +
           34630369-34630431,34630771-34630855,34631212-34631332,
           34631588-34631831,34631922-34632026,34632110-34632154,
           34632243-34632395,34632481-34632762,34632844-34632980,
           34633065-34633152
          Length = 440

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 156 NRFITRNCFVNSNQADDFTRQTVQDVRQAVLSSASLRPXIQEALXRIXFRFHRTCSFSNI 335
           N F+ +N  +N N   DF+  T    R A L SAS+   +  AL    F  +   +++N 
Sbjct: 105 NLFMWKNTRINHNFIFDFSSNTALTHRDAFLMSASIMCTVVAALVINLFLKNAGVAYANA 164

Query: 336 I 338
           +
Sbjct: 165 L 165


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 212 CEIIRLVGIYEAISCYKSVHFSKPSI 135
           C ++     Y A  CYK+V  +KP I
Sbjct: 62  CVLLAFGYAYPAYECYKTVELNKPEI 87


>02_05_1022 +
           33570664-33570976,33572206-33573440,33573873-33574013,
           33574242-33574796,33574914-33575015
          Length = 781

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 337 IILEKLQVR*NLKXILXKAS*IXGLSEADERTACLTSCTVCLVKSSAWLEFTKQFRVINL 158
           ++L++ Q++     +  +AS     S   E   C   C +CLV   + +  T  +RV+ L
Sbjct: 567 LLLQREQLKLGAVHLSLEASTFSKNSRGIELVKCSERCLICLVCEDSIVLHTWAYRVVKL 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,953
Number of Sequences: 37544
Number of extensions: 145145
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)