Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n01
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   4.7  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   4.7  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   4.7  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   4.7  
U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    26   8.2  

>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -3

Query: 212 CEIIRLVGIYEAISCYKSV-----HFSKPS 138
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -3

Query: 212 CEIIRLVGIYEAISCYKSV-----HFSKPS 138
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -3

Query: 212 CEIIRLVGIYEAISCYKSV-----HFSKPS 138
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -3

Query: 212 CEIIRLVGIYEAISCYKSV-----HFSKPS 138
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical
           protein EGAP2.1 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 226 CTVCLVKSSAWLEFTK-QFRVINLFIFQN 143
           C+ C +K  +W E+TK  F+ I  F+  +
Sbjct: 124 CSSCSIKFGSWFEYTKLSFKTIFSFLIMH 152


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 25   HHLAPFIPTSKSIFFH*L*FENYMY 99
            +H +PF+P   SIF H   F +Y+Y
Sbjct: 1155 YHDSPFLPPPFSIFAHVYHFIDYLY 1179


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 25  HHLAPFIPTSKSIFFH*L*FENYMY 99
           +H +PF+P   SIF H   F +Y+Y
Sbjct: 871 YHDSPFLPPPFSIFAHVYHFIDYLY 895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,346,662
Number of Sequences: 27780
Number of extensions: 141914
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)