Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9n01
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.2  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    20   8.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    20   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 41  SSQHQRVSFFINYDLKITCILKLQ*K*XD*LIWTVLKNEQIY----NTKLLRK--FQPG 199
           +S HQR SF +N D  I  + K + K    L+ + + + ++Y      KLL +  F+PG
Sbjct: 116 NSIHQRASFSLNTDGDIAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPG 174


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 36

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 25 HHLAPFIPTSKS 60
          HHL+P +PT  S
Sbjct: 12 HHLSPNMPTMDS 23


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 29  TLHRSSQHQRVSFFINYDLKITCI 100
           T H+S QH+  S  +   LK T I
Sbjct: 52  TTHKSLQHRGSSGMLKRLLKTTAI 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,192
Number of Sequences: 438
Number of extensions: 1766
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)