Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m22
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   1.2  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   3.7  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   4.9  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.9  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   6.4  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 270 DVPEVNHTW-VISPVVRVYPLQRSVARDYHVS 362
           D P +NH+   +S V  + PL +++ +DYH S
Sbjct: 289 DTPRLNHSLSFVSLVSSLPPLDQNIMQDYHTS 320


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 560 PNGINIFRPLSLFFDHSFFVNTVM*KYRKTNKMQYF 453
           PNG    +P   FF H   +N +    +K N + YF
Sbjct: 453 PNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSYF 488


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 495 CNVKIQKNE*NAIFLF 448
           CNVK+  +E NAIFL+
Sbjct: 70  CNVKVSLDEINAIFLY 85


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +3

Query: 282 VNHTWVISPVVRVYPLQRSVARDYHV 359
           VN  W++  + ++Y  ++SV++ Y++
Sbjct: 778 VNRQWILECISQLYEKKKSVSQSYYI 803


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 389 LHPLFTSMISNFDFQLTHFKN-KNIAFYS 472
           L+PLFT  I N +F +  FKN K    YS
Sbjct: 75  LNPLFTFFILNTNFPIPIFKNIKEDLMYS 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,421
Number of Sequences: 5004
Number of extensions: 52441
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)