Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m22
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.57 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 187 LALIPYYMGSGHNVVL 234
           LA +P Y G+G+NV L
Sbjct: 862 LAFVPLYFGTGNNVAL 877


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 390 SVFYFKHQKKKHDNPSLR 337
           +V +F+   + HDNPSLR
Sbjct: 23  TVHWFRKGLRLHDNPSLR 40


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 400 FYFYDFKFRFSINTF*K*KYCILFVFLYFHITVLTKKEWSKKR 528
           FY  DF    S+++F     CI+ VFLY++I    +    K R
Sbjct: 338 FYNTDFIIYSSLSSFYI--PCIIMVFLYYNIFKALRNRARKAR 378


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 231 DDIVSRPHIIWDKSKKKRKSVTNASFEYYTN*IITKDT 118
           D  + R   + DKSKK+  S   +S   YT   +T ++
Sbjct: 768 DKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSES 805


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 231 DDIVSRPHIIWDKSKKKRKSVTNASFEYYTN*IITKDT 118
           D  + R   + DKSKK+  S   +S   YT   +T ++
Sbjct: 858 DKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSES 895


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  FIVIHFLRTGFD*VPSVFIYTYRI 109
           F++  FLRT     P+ F +TY I
Sbjct: 23  FVLFSFLRTRTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  FIVIHFLRTGFD*VPSVFIYTYRI 109
           F++  FLRT     P+ F +TY I
Sbjct: 23  FVLFSFLRTRTKLQPTYFHHTYII 46


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 193 LIPYYMGSGHNVVLSR 240
           ++PYY+ S +N  LSR
Sbjct: 185 VMPYYLKSENNTELSR 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,661
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)