Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9m20
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase prot... 285 1e-77
AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase prot... 71 7e-13
U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical p... 30 1.2
Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical p... 30 1.2
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL110501-8|CAI06051.1| 175|Caenorhabditis elegans Hypothetical ... 28 4.9
Z81526-7|CAB04266.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z73103-2|CAA97425.2| 400|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z47073-2|CAA87373.1| 507|Caenorhabditis elegans Hypothetical pr... 27 8.6
U51997-6|AAG24064.1| 159|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF016662-5|AAB66059.2| 116|Caenorhabditis elegans Hypothetical ... 27 8.6
>AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase protein
1, isoform a protein.
Length = 501
Score = 285 bits (700), Expect = 1e-77
Identities = 137/189 (72%), Positives = 156/189 (82%)
Frame = +3
Query: 51 KTRKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNI 230
K RKE+DTFGEL+VP DK YGAQT RS MNF IGG EERMP PVI AFGILKKAAA VN
Sbjct: 40 KIRKERDTFGELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVIHAFGILKKAAALVNT 99
Query: 231 EYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILG 410
E+GL+KK+ADAI QA D+V+ GKL + HFPLV WQTGSGTQSNMN NEVI+NRAI+ILG
Sbjct: 100 EFGLDKKLADAISQAADEVVDGKL--DEHFPLVTWQTGSGTQSNMNVNEVISNRAIEILG 157
Query: 411 GKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLVALRDTLQAKSKDFE 590
G+LGSK PVHPNDHVN SQSSNDT+PTAMHIAV E+ RL+P L LR L K+++F+
Sbjct: 158 GELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTALHNKAEEFK 217
Query: 591 RIVKIGRTH 617
I+KIGRTH
Sbjct: 218 DIIKIGRTH 226
>AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase protein
1, isoform b protein.
Length = 328
Score = 70.9 bits (166), Expect = 7e-13
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = +3
Query: 462 SQSSNDTYPTAMHIAVAMELRDRLMPGLVALRDTLQAKSKDFERIVKIGRTH 617
SQSSNDT+PTAMHIAV E+ RL+P L LR L K+++F+ I+KIGRTH
Sbjct: 2 SQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTALHNKAEEFKDIIKIGRTH 53
>U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical
protein T13A10.2 protein.
Length = 161
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 435 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 349
P PCC V + RG + P+ CSC Y
Sbjct: 93 PRPCCAVCHDSYASRGPKKPKVCSCLHTY 121
>Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +3
Query: 201 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 380
LKK +A N+ LEKK +IS K + ++ TGS + M+ ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663
Query: 381 IANRAIQILGGKLGSKDP 434
R G + SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681
>Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +3
Query: 201 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 380
LKK +A N+ LEKK +IS K + ++ TGS + M+ ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663
Query: 381 IANRAIQILGGKLGSKDP 434
R G + SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 359 QHEHERGDCEPRHTNTGRETGQQGPGASQ 445
+H ++ DCEP GRE G++GP +Q
Sbjct: 19 RHHYDYYDCEPERGPRGRE-GREGPRGAQ 46
>AL110501-8|CAI06051.1| 175|Caenorhabditis elegans Hypothetical
protein Y79H2A.12 protein.
Length = 175
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 432 PVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLV 548
PV+ + V SNDTYP + + A E DR + GL+
Sbjct: 89 PVYFSSQVASGYESNDTYPNFLGVKTAEE--DRFVIGLL 125
>Z81526-7|CAB04266.2| 330|Caenorhabditis elegans Hypothetical
protein F33H2.8 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 281 IAGLHDRVGNFLFKSIFDIDFGGCFL*YTESDNHG 177
+A H+R G FD F GC L Y + +G
Sbjct: 118 LANSHNRTGELFLVRSFDFLFAGCILFYYSTRQNG 152
>Z73103-2|CAA97425.2| 400|Caenorhabditis elegans Hypothetical
protein C08F8.3 protein.
Length = 400
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +3
Query: 327 VIWQTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIA 506
V+ + G GT+++M NE+ A A QI + G V P H N + S+ T ++
Sbjct: 21 VVEKKGDGTRTSMRQNEIYAYSA-QI---RTGDGCMVMPKIHWNSFEPSDWVSCTLEYVN 76
Query: 507 VAMELRDRLM 536
A +++++ M
Sbjct: 77 KANQIKEKEM 86
>Z47073-2|CAA87373.1| 507|Caenorhabditis elegans Hypothetical
protein ZC506.3 protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 158 NSTDREVHHRTHGLRAI*LVIWHVQLPKGIFFLPR--FDRLAFWV 30
N+TDR V+ G A+ LV+ + P G F P F R+ F V
Sbjct: 116 NATDRNVYDGLLGTLALFLVVSALAFPNGPFIRPHPVFWRIVFGV 160
>U51997-6|AAG24064.1| 159|Caenorhabditis elegans Hypothetical
protein F19G12.1 protein.
Length = 159
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 435 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 349
P PCC V + RG + P+ SC Y
Sbjct: 91 PRPCCAVCLDSYASRGPKKPKVFSCLHTY 119
>AF016662-5|AAB66059.2| 116|Caenorhabditis elegans Hypothetical
protein C33C12.7 protein.
Length = 116
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 368 VHVGLSTGASLPD-DEGEVTLAVELPADDVIAGLHDRV 258
VH+ + T P D G +TL A + IA HDRV
Sbjct: 8 VHIAMETACGKPPKDMGIITLGDGYEASENIAAHHDRV 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,283
Number of Sequences: 27780
Number of extensions: 327719
Number of successful extensions: 996
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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