Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m19
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   2.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    24   3.4  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    23   4.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   7.8  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    23   7.8  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    23   7.8  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 52  LVLENTFKKPIINNLKN 2
           L L N FKKP  NN+ N
Sbjct: 569 LSLNNDFKKPACNNVTN 585


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 84  IRKFSDSCQEASGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQK 230
           +++ + S ++ S E N+KL SS+       +   ++++L+P  QE D+K
Sbjct: 73  LQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQE-DKK 120


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 106 HESENFLINLMFNLFITHL 50
           H + NFL+NL  +L I+H+
Sbjct: 492 HGTWNFLLNLPLSLTISHI 510


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 27   FLKVFSKTRCVMNKLNIKLIRK 92
            FLK+    R +MNKLN+K++ +
Sbjct: 1026 FLKL-DYLRSLMNKLNLKIVMR 1046


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
          orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 88 LINLMFNLFITHLVLE 41
          LINL FN+ +T  V E
Sbjct: 9  LINLQFNIILTFFVYE 24


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 248 FFFSPRFLIKLLTDWS 201
           FFFS   ++K+L  WS
Sbjct: 2   FFFSTHLILKILFFWS 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,724
Number of Sequences: 5004
Number of extensions: 11376
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)