Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m19
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0308 + 4188726-4190351                                           27   2.1  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    27   2.8  
04_04_1437 + 33600282-33601562                                         25   8.5  

>04_01_0308 + 4188726-4190351
          Length = 541

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 60  MNKLNIKLIRKFSDSCQEASGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGG 239
           M +L +K ++    +  EA        D+ K   ++ V    +K+E   VG+E  ++ G 
Sbjct: 438 MYELEVKRLKLELGALAEAKETAMNSFDTEKIKFIMDVEDLKRKIEEIQVGKEATEEVGR 497

Query: 240 EK 245
           +K
Sbjct: 498 DK 499


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 69   LNIKLIRKFSDSCQEASGEINQKLDSS 149
            LN  LIR+  D C +  G++ QK  +S
Sbjct: 1189 LNTALIREHLDQCSDKLGDLQQKFRAS 1215


>04_04_1437 + 33600282-33601562
          Length = 426

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 222 QAPDRLESTLVSCRID 175
           Q+ DR++ST +SCR+D
Sbjct: 157 QSKDRMKSTGLSCRVD 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,600,084
Number of Sequences: 37544
Number of extensions: 59932
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)