Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m19
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    31   0.11 
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81506-8|CAB04125.2|  225|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosi...    25   9.4  
AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosi...    25   9.4  

>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 27  FLKVFSKTRCVMNKLNIKLIRKFSDSCQEA 116
           FL V S T C+ N LN K+ +K+  +CQ++
Sbjct: 168 FLLVLSATSCLGNMLNYKINQKYYRACQQS 197


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 124 SPLAS*HESENFLINLMFNLFITHLVLENT 35
           SP+ + H  + +LINLM N +++  VL+ T
Sbjct: 179 SPVITVHSEKKYLINLM-NAYVSGSVLQYT 207


>Z81506-8|CAB04125.2|  225|Caenorhabditis elegans Hypothetical
           protein F16H6.7 protein.
          Length = 225

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +3

Query: 102 SCQEASGEINQKLDSSK 152
           +C+E + E+N+++DS+K
Sbjct: 142 NCEEVAKEVNERIDSAK 158


>Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical
           protein Y69H2.7 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 33  KVFSKTRCVMNKLNIKLIRKFSDSCQEASGEINQKLDSSKKG 158
           K  + T+ V   +NI++IRK  D CQ    E N K ++ K G
Sbjct: 104 KAVNLTKPVTQSINIQVIRK-EDQCQM---EKNIKKNAKKSG 141


>AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform b protein.
          Length = 440

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 158 TFLAAV*FLIYFTTCFLT*IRKFS 87
           TFLAA+ F+I F   F+   +K+S
Sbjct: 407 TFLAAIGFMIVFAAIFVDIHKKYS 430


>AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform a protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 158 TFLAAV*FLIYFTTCFLT*IRKFS 87
           TFLAA+ F+I F   F+   +K+S
Sbjct: 392 TFLAAIGFMIVFAAIFVDIHKKYS 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,307,749
Number of Sequences: 27780
Number of extensions: 62849
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)