Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m19
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   0.25 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   4.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   4.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   5.3  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 0.25
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 72  NIKLIRKFSDSCQEASGEINQKLDSSKKGL 161
           +I  +RK    C E +G   +K D  KKG+
Sbjct: 22  SINKLRKIESVCAEENGIDLKKADDVKKGI 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 218  LLTDWSQL*FLAAL 177
            LLT+WS+  F AAL
Sbjct: 1136 LLTEWSRFEFRAAL 1149


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 89  SYQFNV*FIHNTSC 48
           +YQ NV   HN SC
Sbjct: 154 TYQTNVVVTHNGSC 167


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 89  SYQFNV*FIHNTSC 48
           +YQ NV   HN SC
Sbjct: 154 TYQTNVVVTHNGSC 167


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 173 LSMRQETRVDSSRSG 217
           L +R+E RVD  R+G
Sbjct: 157 LKIREEIRVDPFRTG 171


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 173 LSMRQETRVDSSRSG 217
           L +R+E RVD  R+G
Sbjct: 157 LKIREEIRVDPFRTG 171


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 97  ENFLINLMFNLFITHLVLENT 35
           + + ++ M N+   +LVLENT
Sbjct: 277 DKWFLHKMKNIIDYYLVLENT 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,445
Number of Sequences: 438
Number of extensions: 715
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)