Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9m17
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 3.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.3
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 7.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.3
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 7.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.3
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.3
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 25 7.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.3
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 24 9.7
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 83 IAPNTFLCRFELRTGSLFYGILLTSAMVICTITMIVD 193
+ P LCR ++ Y ILL + + +C I++++D
Sbjct: 71 LLPIFLLCRCICKSNCSPYPILLFTRLYMCLISLLID 107
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -1
Query: 321 YHFLTPHISHKWTHNMNKQYTPAVIL*LVTVFEHSVFLIKFTVSTIM 181
YH L P + + K Y ++L LV V H + + ++I+
Sbjct: 87 YHHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIV 133
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 145 IIDKCNGDLHNNHDRGY--GEL--DQEHGVLEDRHKLQDHRRSVLFVH 276
++D + L NH + GEL DQ++ +L+ K+ DH + F H
Sbjct: 810 LLDHTSESLLYNHVVRFTLGELNRDQQNAILKQIPKVPDHSSYIAFCH 857
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 211 EHGVLEDRHKLQDHRRSVLFVH 276
EHG L +HKL D +S+ H
Sbjct: 526 EHGELSSKHKLGDRVKSLFGSH 547
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 240 LVTVFEHSVFLIKFTVSTIMVIVQITIALVNNMP*NNEPVLSS 112
L T+F+ + L +FT + + I ++N P P+LS+
Sbjct: 115 LETIFKENEILNEFTPVEVALASDIYFCVLNGAPVREYPLLSA 157
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 119 RTGSLFYGILLTSAMVICTITMIVDTVNLIKNTECSK 229
+ G L YG LT I++IVD +KN + S+
Sbjct: 298 KEGGLVYGNDLTGLRFADLISIIVDETGSVKNPKFSQ 334
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VSLFNAPYQPQMDTQHEQT 266
V F+ PY+PQ D Q E+T
Sbjct: 1070 VMKFSLPYRPQTDGQTERT 1088
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 111 KRHKNVFGAIRSNHILF 61
K HKNV G +++ H F
Sbjct: 153 KNHKNVSGIVKATHFAF 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,305
Number of Sequences: 5004
Number of extensions: 35217
Number of successful extensions: 130
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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