Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m17
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214...    30   0.78 
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...    28   3.1  
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400...    27   9.6  
09_04_0612 - 18950025-18950192,18950501-18950637,18951202-189513...    27   9.6  
03_03_0240 - 15741024-15741197,15741531-15741710,15742782-157430...    27   9.6  
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110...    27   9.6  

>11_06_0553 -
           24920428-24921057,24921149-24921276,24921372-24921409,
           24921522-24921734,24921906-24921998,24922089-24922276,
           24922396-24922502,24922614-24922775,24922870-24922953,
           24923060-24923168,24923340-24923468,24923504-24923556,
           24923654-24923759,24924082-24924189
          Length = 715

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 160 NGDLHNNHDRGYGELDQEHGVLEDRHKLQDHRR 258
           NG +  NHD+    L +E   L  R +  DHRR
Sbjct: 153 NGGIMLNHDKDISALQEEISALRSRQRHLDHRR 185


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 169 LHNNHDRGYGELDQEHGVLEDRHKLQDHRRSVLFVHVVCPFVADMGR*KVIPFY 330
           L  +HD+GY +L +      DR   +D      FVH +   +A+     + P Y
Sbjct: 74  LRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLHLDLEPLY 127


>12_02_1042 + 25638585-25638711,25639585-25639745,25639873-25640064,
            25640221-25640315,25640645-25640807,25640905-25641015,
            25641611-25642741,25642813-25642965,25643060-25643159,
            25643333-25643427,25643508-25643681,25643751-25643807,
            25643887-25643958,25644151-25644249,25644320-25644451,
            25644549-25644722,25644830-25644957,25645065-25645119
          Length = 1072

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 340  LVSRKMVSLFNAPYQPQMDTQHEQTVHSCGDPVACDGLRALRVLDQVHRIHD 185
            +V +K++   +A +Q  MD    +  HS    + CDG+ +   LD+V  +H+
Sbjct: 891  IVEQKLLHFVDAFHQYVMD----RVYHSAWTEL-CDGMASATTLDEVMEVHE 937


>09_04_0612 -
           18950025-18950192,18950501-18950637,18951202-18951350,
           18951738-18951968,18952654-18952724
          Length = 251

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 100 FMPFRTKNRFIILWHIIDKCNGDLHNNHDRG 192
           F+PF     + +LW + DK   D  +   RG
Sbjct: 198 FLPFPYSRSYKVLWRVFDKLFTDFRDCFSRG 228


>03_03_0240 -
           15741024-15741197,15741531-15741710,15742782-15743040,
           15743120-15743355,15743667-15743732,15744540-15744623
          Length = 332

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 FIILWHIIDKCNGDLHNNHDRGYGELDQEH 216
           F+  W+++ +    L NNHDR   +L+  H
Sbjct: 237 FLFRWNLLRQLVSQLANNHDRYLKQLNGTH 266


>02_04_0038 -
           19110520-19110574,19110684-19110811,19110912-19111085,
           19111189-19111320,19111391-19111489,19111680-19111751,
           19111831-19111887,19111957-19112130,19112211-19112305,
           19112478-19112577,19112672-19112824,19112896-19114026,
           19114621-19114731,19114829-19114991,19115364-19115458,
           19115613-19115804,19115929-19116069
          Length = 1023

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 340 LVSRKMVSLFNAPYQPQMDTQHEQTVHSCGDPVACDGLRALRVLDQVHRIHD 185
           +V +K++   +A +Q  MD    +  HS    + CDG+ +   LD+V  +H+
Sbjct: 842 IVEQKLLHFVDAFHQYVMD----RVYHSAWTEL-CDGMASATTLDEVMEVHE 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,209
Number of Sequences: 37544
Number of extensions: 209277
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)