Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m17
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      28   2.8  
U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL110501-7|CAB54508.2|  167|Caenorhabditis elegans Hypothetical ...    27   5.0  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    27   6.6  
U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily ass...    27   6.6  

>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 306 PHISHKWTHNMNKQYTPAVIL*LVTVFEHSVFLIKFTVSTIMVIV 172
           P +   WTH +NK+++   +L  V V    +FL  F   T+  ++
Sbjct: 254 PKMESSWTHAVNKEWSITFVLCSVIVCTIMLFLAVFGTFTVFYLM 298


>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 286 DTQHEQTVHSCGDPVACDGLRALRVLDQVHRIHDHGYCANHHCTCQ 149
           +T+++QTV S G   A   + A+R L +V  + +   CA  HCT +
Sbjct: 361 NTRNKQTVCSHGGIDAL--VTAIRRLPEVEEVTEPALCALRHCTAR 404


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 286 DTQHEQTVHSCGDPVACDGLRALRVLDQVHRIHDHGYCANHHCTCQ 149
           +T+++QTV S G   A   + A+R L +V  + +   CA  HCT +
Sbjct: 361 NTRNKQTVCSHGGIDAL--VTAIRRLPEVEEVTEPALCALRHCTAR 404


>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 67  NVVRSYRTKYIFMPFRTKNRFIILWHIIDKCNGDLHN 177
           N+  S + + IF  +R   +  +LW + DKC+G L N
Sbjct: 147 NMESSLKVQSIF--WRNPRKCDLLWKMFDKCDGSLLN 181


>AL110501-7|CAB54508.2|  167|Caenorhabditis elegans Hypothetical
           protein Y79H2A.2 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 330 VKWYHFLTPHISHKWTHNMNKQYTPAVIL*LVTVFEHSVFLIKFTVSTIMVIVQITIA 157
           V W   L P  +HKW  ++       + L L+T+    +   KF +   +VI+ I IA
Sbjct: 31  VNWIFDLAPIEAHKWAISIGMIIGAVLELVLITII---ILECKFLIFISLVILAINIA 85


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 DRGYGELDQEHGVLEDRHKLQDHRR 258
           D  Y  L QEH  L+D+H++  H R
Sbjct: 140 DLDYNRLRQEHRKLKDQHEVLRHER 164


>U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 249 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 169 LHNNHDRGYGELDQEHGVLEDRHKLQ 246
           LH+ + R + ELD + G  + RH+L+
Sbjct: 346 LHHMNKRDWPELDTDEGYAKQRHRLE 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,965
Number of Sequences: 27780
Number of extensions: 209513
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)