Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m17
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 200 NLIKNTECSKT 232
           NLIKNT C+K+
Sbjct: 410 NLIKNTRCAKS 420


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 346  GRLVSRKMVSLFNAPYQPQMDTQHEQ 269
            G+   R   +L +AP QPQ   Q +Q
Sbjct: 1433 GQQEDRDRKTLTSAPQQPQQQQQQQQ 1458


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 319 SLFNAPYQPQMDTQHEQTVHSC 254
           S FNA    ++ + HE  VH C
Sbjct: 81  SSFNAQSWQRLTSLHELHVHGC 102



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 74  LDRIAPNTFLCRFELRTGSLFYGILLTSAMVICTITMIVDTVNLIKNTECSKTVTSYR 247
           +DRI  N FL  + L T  L    L T    +     +++ + L  N   S    ++R
Sbjct: 371 IDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFR 428


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 143 ILLTSAMVICTITMIVDTVNLI 208
           ILL + + IC ITM+   + +I
Sbjct: 83  ILLQNIIDICWITMVYSLLGII 104


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 208 DQVHRIHDHGYC 173
           D+VH ++ HG C
Sbjct: 272 DKVHPLYGHGVC 283


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 70 HFVWIIKVKIFDKNTINTLNS 8
          HF+WI+ + + +   I T+ S
Sbjct: 3  HFLWIVFLALANGEEIKTIYS 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,242
Number of Sequences: 438
Number of extensions: 2449
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)