Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m16
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   5.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.1  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.8  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 221 ILTAYTSEELAINNNNGEYNSRSLPRV 301
           ILT  +   ++INNN    +S S P V
Sbjct: 150 ILTKTSPTPVSINNNTSTSSSASSPSV 176


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 387 WKTKLKMTRSPYGLPPHKIRRTRKHV-GEAL 476
           W+ K  +  +P+   PH  + T K V GE +
Sbjct: 480 WREKCVVEGNPHCWVPHSCKLTSKEVPGETI 510


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 444 RRTRKHVGEALRQTHRSQEH 503
           +R +    E +RQTH+S  H
Sbjct: 234 KRFKDEKKELIRQTHKSPSH 253


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 399 LKMTRSPYGLPPHKIRRTRKHVGEA 473
           L + ++ YGLP H I  +  H+ ++
Sbjct: 58  LTIIQNGYGLPGHTIIASNHHLAKS 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,765
Number of Sequences: 336
Number of extensions: 2883
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)