Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m16
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.3  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    25   9.7  
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   9.7  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.7  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 304 PHSRKAPRIVFPVVIVDGEFLASVCSEDA 218
           P  +  PRI+ P +  DG  +  VC  DA
Sbjct: 406 PTLKNWPRIIRPPLKRDGHVIIDVCDSDA 434


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 304 PHSRKAPRIVFPVVIVDGEFLASVCSEDA 218
           P  +  PRI+ P +  DG  +  VC  DA
Sbjct: 406 PTLKNWPRIIRPPLKRDGHVIIDVCDSDA 434


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 212 DRRILTAYTSEELAINNNNGEYNSRSLPRVRLDTG 316
           +++I T+ +S E +  NNNG+  +   P+   + G
Sbjct: 18  NKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELG 52


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 375 LKRMWKTKLKMTRSP----YGLPPHKIRRTRKHVGEALRQTHRSQEHRR 509
           ++R+ K K  M+ S     YG+ P  IRR  K     L    +S++ +R
Sbjct: 57  IRRLKKEKSSMSCSELAKLYGVSPESIRRILKSSNRPLDDREKSRKEKR 105


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 396 KLKMTRSPYGLPPHKIRRTRKHVGEAL 476
           ++K  R+PYG+ P  ++R  K   E L
Sbjct: 45  QMKKPRAPYGMGPRAMKRREKAEKEKL 71


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 218 RILTAYTSEELAINNNN 268
           RI +AY  +EL +NNNN
Sbjct: 763 RISSAYIVDELELNNNN 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,871
Number of Sequences: 5004
Number of extensions: 48408
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)