Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m16
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0052 - 867152-867255,867322-867433,868996-869066,869526-86...    28   5.7  
02_02_0615 - 12152941-12153726                                         28   5.7  
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    28   7.6  
02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557     28   7.6  

>09_01_0052 -
           867152-867255,867322-867433,868996-869066,869526-869623,
           869988-870060,872280-872670
          Length = 282

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 217 PVLLKYAIEGLPGE-RHSHYRSGDGTSCDI 131
           P+ L   + G+  E  H  Y  GDG+SCD+
Sbjct: 5   PLFLLLLLTGVTAEPAHPGYAEGDGSSCDV 34


>02_02_0615 - 12152941-12153726
          Length = 261

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 256 DGEFLASVCSEDAPVLLKYAIEGLPGERHSH 164
           D   +  +CS++ P + K ++E  PG+ H H
Sbjct: 145 DVTVMKPICSKETPAMPKPSVEVPPGDLHQH 175


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 550 LRKEKRS*SGRTVLRLCSWDRCVWRRASPTCFLVRRILCGGS 425
           L+K   S  GR V  LC+     WR   P   +VRR+L  G+
Sbjct: 47  LKKSGGSIDGRNVFGLCALHLATWRNHLP---IVRRLLDAGA 85


>02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557
          Length = 384

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 393 TKLKMTRSPYGLPPHKIRRTRKHVGEALRQTHRSQEHRRSTV 518
           TK+ +   P+ LPP    +TRK  G  L++    QE  RS +
Sbjct: 273 TKILLPPQPFFLPPPSQEKTRKSWG--LKEKKNHQEKSRSKI 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,098
Number of Sequences: 37544
Number of extensions: 371510
Number of successful extensions: 1152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)