Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m16
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40914| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         30   1.5  
SB_28371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)                     29   3.4  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)                   28   5.9  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   7.7  
SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)             28   7.7  
SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)             28   7.7  
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)                    28   7.7  

>SB_40914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 353 SSVVSRPHSAPALRCQAALEEGSSNC 276
           S    RPHSAP  R   + E+G S+C
Sbjct: 22  SRATPRPHSAPKWRLNTSTEQGKSSC 47


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = -2

Query: 370 GRRSGPAA*SHARTRHLPSGVKPHSRKAPRIVFPVVIVDGEFLASVCSE-DAPVLLKYAI 194
           G+ S P    H+ T H P    P S  +PR V PVVI   + +A   ++  A   L+  +
Sbjct: 717 GKHSRPET-PHS-TPHSPGRQTPQSSHSPRSVTPVVIQPEKSIAVESADAKAEAELQREL 774

Query: 193 EGLPGER-HSHYRSGDGTSCDIYIEQVSR 110
           + L  E    HY++  G + +I + ++++
Sbjct: 775 QTLDTEAVKQHYQTIIGDNMEILVAEMTK 803


>SB_28371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 338 RPHSAPALRCQAALEEGSSNC 276
           RPHSAP  R   + E+G S+C
Sbjct: 97  RPHSAPQWRLNTSTEQGKSSC 117


>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
          Length = 758

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 579 EQNQQRNWKKSELWLPYQRIRLHTRCG 659
           EQ +QRN K  ELWL  + +R+ TR G
Sbjct: 495 EQGRQRNPKSPELWL--EAVRIETRGG 519


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 353 SSVVSRPHSAPALRCQAALEEGSSNC 276
           S    RPHSAP  R   + E+G S C
Sbjct: 238 SRATPRPHSAPKWRLNTSTEQGESFC 263


>SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)
          Length = 625

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 179 SWEPFYCVLQQDRRILTA-YTS---EELAINNNNGEYNSRSLPRVR 304
           SW+P         R  TA Y S   E   INN NG Y+++S P+ R
Sbjct: 305 SWKPPESAEINGDRFATANYVSKNDESFVINNKNGIYDTKSSPQYR 350


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -2

Query: 382  LFSNGRRSGPAA*SHARTRHLPSGVKPHSRKAPRIVFPVVIVDGEFLASVCS-EDAPV-- 212
            L   G   GP+         + S ++P+  K P+    VV  D   L   CS ++ PV  
Sbjct: 925  LLKTGMVGGPSIVFTRYAEKVKSKIRPYKYKDPKTCKSVVGFDANSLYLYCSGQEMPVKK 984

Query: 211  -LLKYAIEGLPGERHSHYRSGDGTSCDIYIEQVS 113
              L+   + +P    +  ++   TSC +++  +S
Sbjct: 985  NTLRSKTQRIPNMLTTFVKTFLPTSCLVFVRWIS 1018


>SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 353 SSVVSRPHSAPALRCQAALEEGSSNC 276
           S    RP+SAP  R   + E+G S+C
Sbjct: 73  SRATPRPYSAPKWRLNTSTEQGESSC 98


>SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
          Length = 119

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 353 SSVVSRPHSAPALRCQAALEEGSSNC 276
           S    RP+SAP  R   + E+G S+C
Sbjct: 30  SRATPRPYSAPKWRLNTSTEQGESSC 55


>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
          Length = 1033

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 171 CRSPGSPSIAYFNKTGASSLHTLARNSPSTITT 269
           CR P  P I YF+ T  S+L+ +    P+ + T
Sbjct: 42  CRFPTRPLIRYFSFTALSTLYGIDHIKPAVLKT 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,134,291
Number of Sequences: 59808
Number of extensions: 399853
Number of successful extensions: 1143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)