Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m16
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    23   2.0  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    23   2.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  

>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 509 APVLLGPVCLAQSLADMLSRTTYLVRGQ 426
           A V+L   C+A  ++D+ ++T+  V+G+
Sbjct: 6   AVVVLAAFCVAMLVSDVSAKTSISVKGE 33


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 509 APVLLGPVCLAQSLADMLSRTTYLVRGQ 426
           A V+L   C+A  ++D+ ++T+  V+G+
Sbjct: 6   AVVVLAAFCVAMLVSDVSAKTSISVKGE 33


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 353 SSVVSRPHSAPALRCQAALEEGSSNCIPRCYC 258
           S  +S  HSA A+RC A   +G S     C C
Sbjct: 71  SKWLSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = +2

Query: 209 QDRRILTAYTSEELAINNNNGEYNSRSL 292
           ++ +I+++ +++ +  NNN   YN++ L
Sbjct: 299 KEPKIISSLSNKTIHNNNNYNNYNNKKL 326


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 211 LLKYAIEGLPGERHSHYRSGDG 146
           L K   EGL G++    ++GDG
Sbjct: 515 LRKVDFEGLSGDKFKFDKNGDG 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,450
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)